Auricularia subglabra: AURDEDRAFT_164723
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Entry
AURDEDRAFT_164723 CDS
T03129
Name
(GenBank) hypothetical protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
adl
Auricularia subglabra
Pathway
adl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AURDEDRAFT_164723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
adl03000
]
AURDEDRAFT_164723
03019 Messenger RNA biogenesis [BR:
adl03019
]
AURDEDRAFT_164723
04121 Ubiquitin system [BR:
adl04121
]
AURDEDRAFT_164723
Enzymes [BR:
adl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
AURDEDRAFT_164723
Transcription factors [BR:
adl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
AURDEDRAFT_164723
Messenger RNA biogenesis [BR:
adl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AURDEDRAFT_164723
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AURDEDRAFT_164723
Ubiquitin system [BR:
adl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
AURDEDRAFT_164723
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Prok-RING_4
zf-C3HC4_3
zf-RING_2
Baculo_IE-1
Motif
Other DBs
NCBI-ProteinID:
EJD46065
JGI:
164723
LinkDB
All DBs
AA seq
1421 aa
AA seq
DB search
MSARTAQLPQSTTVSVHSKSHVLAGVQDAYWSDDENEDTECPLCMEQMDASDLGFKPCPC
GYQICGFCWHHIKQNLNGRCPACRREYSDDAVEYTKMPADELKRLNQQKKAKERERKEIE
QLGRKHLLNVRIVQRNQVYVVGLGPRLAKEEFIPSLRSNEYFGQYGKISKILLVKRNQPG
SRQPVVGLYVTYHRREDAARAIAAVDGTPSPGGGGEIMRASHGTTKYCMSFLRNVNCSQP
GCLDLHDWGDERDCFTKEDLSTLKHTMKDTELGKANGKRDDGSALPRTAAWAQRGSAGSQ
TQPPGLPPPQPRQRQGRDRGETQRSRNNNQAGAGASARTSGTDGARNRTSQRAAAASKVS
IPTSAASQASSSRPSTPALAAPPAARAEPAPPAPPVTPPPPIRSPTSSIAQESETSSSVP
EVPPALPAPPPAAPQPPHQQQQPPQDAASAQQQQARGQYQLSTQAQALVDDVRARRESAQ
TNGATAAVQSPFPDFDRLLSTLGEEIVGFSLDQKLAGRMGADVDLERELASGGGFDPFSI
QPQQKGGFFAPPGLSSPPGLAQPDQYSSLDSTPSKPSYTGSFNPFAADLAESPKRSADEG
YRSVSRFNFARRPAGSATSSPYMGIGSLAGSVVGDSDGRSSRLSSLQQMQSPVVEQQHGS
LPPWAQQHQNQTLAQHHHQQHQQQHHYQQTHHQQQAHHQQQQQHHLHQLQQQMRLPPGMP
LPAHLLQQQQQQQQQQQYLQQQQQQQQEQQQRFGFQPFDDYRTQAAQAQVPSGMGFHQQM
RMPAAVPNYSHYRNHRNSVSSLSIASTTPASLASSLPIHDDSFPPLQQQFFAHAQQQALP
YSVPVPVPVQPPTPSARSSVSAIAAQSPIGAQRPPRRPSVSHTRQSTLSSSFLGSGGSVP
ESPAVALDVISPPPQVLTPAPPPHVLAPAPVVSAPLPALEPATPVLSASEFPALPVSAPV
EARPLPSFIATPSAPKLSTPTPKTRKEKHKEKEEEKKKREAEKEKEKEKEAMEPPSHSKA
APSVSTPAKTPSKSSKKAEPSTPAAAEPKKKAAAAPVERVASPPPAVVSTPTKPQRQQKE
KEKEKEKEKPAPVPPPPAPEPEAPAPMVSKMPKKFKPSSKVVKVREETAEPEDGVESQPA
PDRVTPSMDDEMSPFLRGIPGYSVKRATLAELLQSLQQRDIDLQAFSFFSPSTLTSKSQT
PLKYGPLVHALSALSVGGGSFANTLPSGSIDTAVSSFQQLLETLTQTISDLLRLLPRTTW
DDSSSFDGVLRDMLKGDDFLDENGEGRGTPAPPASEPQDGDEVTALTQALEKRARWMEVQ
LAKLEELHRDINTAAARAVLSLNDAGWDRIAPDEGRYDHRPDLFLPHQTKTLRRYDELTD
AASRMSIPELEVKLAEEKRKEALAEASLKALMNVNTQLLWN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgagaacagcgcagctgccgcagtcgacgaccgtgtccgtgcactccaagtcc
cacgtgctcgccggcgtccaggacgcgtactggagcgacgatgagaacgaggacaccgag
tgcccgctgtgcatggagcagatggacgcatcggacctgggcttcaaaccgtgtccgtgt
ggctaccagatctgcgggttctgctggcaccacatcaagcagaacctgaacggccgctgc
cccgcctgccgccgcgagtactccgacgacgcggtcgagtacaccaagatgcccgcggac
gagctcaagcgcctcaaccagcagaagaaggcgaaggagcgcgagcgcaaggaaatagaa
cagctgggccgcaagcacctgctcaacgtccgcatcgtccagcgcaaccaggtatacgtc
gtcgggctgggaccgcgactcgcaaaggaggagttcatcccgtcattgcggtccaacgaa
tactttggccagtacggcaagatttcaaagatcctgctcgtcaagcgcaaccagcccggc
tcgcgccagccggtcgtcggcctgtatgttacctaccaccgccgcgaggacgccgcgcgc
gccattgccgccgtcgacgggacgccctcgccaggtggcggtggggagataatgcgcgcg
agccatggcacaacaaagtactgcatgagctttctgcgcaacgtcaattgctcccagccc
ggatgcttggatttgcacgactggggcgatgagcgcgactgcttcaccaaggaggatctc
tcgacgctgaagcacacgatgaaggacacagagctgggcaaggccaacggcaaacgggac
gatgggtctgccctcccgcgcaccgcggcatgggcacaaaggggttccgcgggctcgcag
acgcagccgccgggccttcccccgccgcagccacggcagcgacagggcagagaccgcggc
gagacgcagcggtcgcggaataacaatcaggcaggcgccggtgcatccgcgcggacgtct
ggcacggacggtgctcggaatcggacgagccagcgtgccgcagccgcgagcaaagttagc
atcccaacgtctgcggcctctcaggcatcgtcctcgcggcctagcacgcccgcacttgcg
gcgccaccggccgcacgtgctgagcctgcacccccggcgccacccgtcacgccgcccccg
ccgatccgctcgcctacgtcgtctatcgcacaagagtccgagactagttcctctgtgcct
gaggtgcctcccgccctgcctgcgccgcccccagcagcaccccagccgccccaccagcag
cagcaacctccccaggatgcggcgtcggctcagcagcagcaggcgcggggccagtatcag
ctttctacccaagcccaggcgctcgtcgacgatgtgcgcgcacgccgtgagagcgctcag
accaacggtgcgaccgctgcagtacagagcccgttccccgatttcgaccggttgttgtcg
acgctcggtgaggagattgtcgggttcagcctcgaccagaagcttgcggggcgtatgggc
gcggacgtcgatctcgagcgggagctggcaagtggcggcggcttcgacccgttcagcatc
cagccgcagcagaagggtggtttcttcgctccaccgggcctgtcgagcccgcctggcctg
gcgcagcccgatcagtactcgtcgctggattctacaccctcgaagccgagctataccggc
agcttcaatccgtttgcggcagacttggcggagtcgccgaagcgctctgcagacgaggga
taccggtctgtgtcaaggttcaactttgcgcgccggccggcggggagcgctacgtcgtcg
ccgtacatgggcattggaagtcttgctggctctgttgtgggagacagtgatggccggagc
tcgcggttgagctcgctgcagcagatgcagagcccggttgtggagcagcagcatgggtct
ttaccgccgtgggcccagcagcaccagaatcagactttggcgcaacaccatcaccagcag
caccagcagcagcaccactaccagcagacgcatcatcagcaacaggcgcaccaccagcaa
cagcagcaacatcatctgcaccagcttcagcagcagatgcgtctgccgccggggatgccg
ctgcccgcgcacctacttcagcagcagcagcaacagcagcaacagcaacagtacctgcaa
cagcagcagcagcagcagcaggaacagcaacagcgctttgggttccagccgttcgacgac
taccgaactcaagcggcacaagcgcaggttccctccggtatggggtttcaccagcagatg
cgtatgcccgcggcagtgcccaactacagccactaccgcaaccatcgtaattccgtttcg
tcgctttcgatcgcttccacaacgccggccagcctcgcgtcctctcttcccatacacgac
gactcgttcccgcccctccagcaacagttctttgcccacgcccaacagcaagcgctccca
tattccgttcccgttcctgttcctgtccagccacccacgccgtccgctcgttcgtccgtt
tctgctattgccgcgcagtcgcccattggcgcgcagcggccgccgcgtcgcccgtctgtc
tcccatacccgccagagcaccctctccagttctttcctcggctctggaggctcggtcccc
gagtctcccgccgtagctcttgatgtcatctcgccgccaccgcaagtccttacgcccgct
ccgcccccgcacgtccttgctcctgctcctgtggtttccgctccccttcctgccctcgag
cccgctacgcctgttctctctgctagcgagttcccggcgctacccgtctccgcgccagtc
gaggcgcgtccgctgccctcgttcatcgccaccccgtccgcgccgaagctctccacgccg
acgccgaagacacgcaaagagaagcacaaggaaaaggaagaggagaagaaaaagagggag
gccgagaaggagaaggaaaaggaaaaagaagccatggaacctccctcgcattctaaggcg
gctccttccgtctcgacgccggcgaagacgccttccaagtcaagcaagaaggcggagcct
tcgacgccagcggcagctgagcccaagaagaaagctgccgctgcgccggtggagcgcgtc
gcatccccgccccccgccgtcgtctccactccaaccaagccccagcgtcagcagaaggag
aaggaaaaggaaaaggaaaaggagaagcctgcgccggtgccgccacctcctgcgcccgag
ccagaggctcctgctccgatggtgtcgaagatgcccaagaagttcaagccgtcgagcaag
gtcgtcaaagtccgcgaggaaacggcggagcccgaggacggcgtcgagagccagccggcg
ccggaccgcgtgacgccgtcgatggacgacgagatgagccccttcctgcgcggtatccct
ggctacagcgtcaagcgcgcaactcttgccgagctgctgcagtctctccagcagcgcgac
attgacctgcaggcgttctcgttcttcagcccgtcgaccttgaccagcaagtcacagacg
ccgctcaagtacggcccgttggtgcatgcgctgtccgccttgtccgtgggcggaggttct
ttcgccaacaccctgccgtctggctctatcgacaccgccgtcagctcgttccagcagctc
ctcgagactctcacgcagaccatttccgaccttctgcgccttctgccgcgcacgacgtgg
gacgatagctcgtcgttcgacggtgtgctgcgcgacatgctcaagggtgacgacttcctg
gacgagaacggcgagggacgcggcactcccgcgccaccggccagcgagccgcaggacggg
gacgaggtgaccgcgctgacgcaggcgctggagaaacgcgcgcgctggatggaggtgcag
ctcgccaagcttgaagagctgcaccgcgacatcaacaccgccgctgcgcgcgccgtgctc
tcgctgaacgacgccgggtgggaccgcatcgcgccggacgagggccggtacgaccatcgg
ccggacctcttcctgccgcaccagaccaagactctgcggcggtacgacgagttgacggac
gcggcgtcgcgaatgtctattcccgagctcgaggtcaagctcgcggaggagaaacgaaag
gaggcgctcgctgaggcgtcgctcaaggctcttatgaacgttaacacgcagctgctgtgg
aactga
DBGET
integrated database retrieval system
