KEGG   Auricularia subglabra: AURDEDRAFT_96859
Entry
AURDEDRAFT_96859  CDS       T03129                                 
Name
(GenBank) nuclear matrix protein NMP200
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
adl  Auricularia subglabra
Pathway
adl03040  Spliceosome
adl04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:adl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AURDEDRAFT_96859
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    AURDEDRAFT_96859
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:adl03041]
    AURDEDRAFT_96859
   04121 Ubiquitin system [BR:adl04121]
    AURDEDRAFT_96859
   03400 DNA repair and recombination proteins [BR:adl03400]
    AURDEDRAFT_96859
Enzymes [BR:adl01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     AURDEDRAFT_96859
Spliceosome [BR:adl03041]
 Complex B
  Other components
   Prp19 complex
    AURDEDRAFT_96859
 Complex C
   Prp19-CDC5 complex
    AURDEDRAFT_96859
Ubiquitin system [BR:adl04121]
 Ubiquitin ligases (E3)
  U-box type E3
   AURDEDRAFT_96859
DNA repair and recombination proteins [BR:adl03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    AURDEDRAFT_96859
SSDB
Motif
Pfam: WD40_Prp19 Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st WD40 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_RFWD3 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_IFT122_1st U-box Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_WDR75_1st zf-Nse B-prop_COPA_B_2nd eIF2A KNTC1_N Beta-prop_HPS5 Beta-prop_NUP159_NUP214 PEP5_VPS11_N DUF3450 PQQ Med16_N Beta-prop_WDR35_TULP_N
Other DBs
NCBI-ProteinID: EJD52948
JGI: 96859
LinkDB
AA seq 502 aa
MFFCAISGEPPQDPVVSAKSGHVYERRLITKYIADNGTDPVTGEKLEESDLVSVKATPNA
APPRPPNLTSIPALLHTLQNEWDALVLETFALKQQYQSTRQELSNALYQQDAATRVVARL
IRERDAAREALADVQATMGIAPSANGTGDVEMDTAADEPAGLPADIVAIIDETQKTLSDG
RKKRKTPAGYATAADLKGYAVKDTISSLHSASTTGINSLVISRAQPSLFLTGGNDKIVQL
YDRPANKVVATLKGHTKKVNQVQFREKDGQTTLILSASADKSSRIWAQDAASGEYAPHHT
IKAHKGEITGLAVHPTQLIVGLSSSDKTYSLHNLATSQELLHSAPFEDPFASISVHPDGT
FYALGTSNGSIQIYDARTGSTLSSLELETGGGFSVHTSSFSENGYHLAAPSSASSVAIWD
LRKLKPTKTVSLGDFSINRVLYDYSGQYLAVAGSGGARVFAHKSWDEIVTFGDSAVTDVA
WGEGGKEFWGSAGREVKIWSAS
NT seq 1509 nt   +upstreamnt  +downstreamnt
atgttcttctgcgcaatctctggcgagccgccgcaggacccggtggtctctgccaagtcg
ggacacgtctacgagcgccgcctgatcaccaagtacattgcagacaacgggacggacccg
gtcacgggcgaaaagctcgaggagtcggacctcgtcagcgtcaaagccactcccaatgcc
gcaccgccgcgccctccgaacctgacctccattccggcgctattacacacgctccagaac
gaatgggacgcgctcgtactggagactttcgcgctcaagcaacagtatcaatctacgcgt
caagaactcagtaacgccctgtaccaacaggacgctgccactcgtgtagtcgcgcgcctc
atccgcgagcgcgacgctgcacgagaagcattggcggatgtccaggcgactatgggcatt
gcgccctccgccaacggcaccggggatgtggagatggatactgctgctgatgaacccgcg
ggtctgcccgcggacatcgtggctatcattgacgagacgcagaagaccctctcggatgga
cgcaagaagcgcaagacccctgcgggctacgcgacggctgcagacttgaagggttatgcg
gtcaaggatacgatctcgtccttacactccgcttcgaccacgggcattaattcgctggtc
atctctcgggcccagccttcgttattcctgacgggcggcaacgacaagattgtgcaactt
tacgaccgtccagcaaacaaggtcgtcgcgaccctgaagggccataccaagaaggtcaac
caggttcagttccgcgagaaggacggccagaccaccctcattctgtccgccagcgcagac
aagtcttcgcgcatctgggcacaggatgctgcatcaggcgagtacgctcctcaccataca
atcaaggcgcacaagggcgagatcaccggtcttgccgtccacccgacgcaactcatcgtt
ggcttgtcgtcgagcgacaagacgtactcgctgcacaatctggcgacttctcaggagcta
ttgcactcggctccgttcgaggatcccttcgcgtcaatctccgtccaccctgacggcacg
ttctatgccctcggaacaagcaacggtagcatccagatctacgatgctcgcacgggaagc
actctgagctccctcgagctcgagactggcggcgggttctctgtgcacacttcgtccttc
tctgagaatggctatcatcttgcggcgccttcctcggcgtcctcggtggctatttgggac
ctgcgcaagctgaagccgacgaagaccgtctcgctcggcgacttcagcatcaaccgcgtc
ctgtacgattacagcgggcagtatctcgctgtcgcgggatctggcggcgcacgcgtattc
gcgcacaagagctgggacgagatcgtaacgtttggggactccgccgtcaccgacgtcgcg
tggggcgagggagggaaggagttctgggggagcgccgggcgcgaggttaagatatggtcc
gcgtcctga

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