Alicycliphilus denitrificans BC: Alide_0463
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Entry
Alide_0463 CDS
T01397
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Alide_0463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adn03021
]
Alide_0463
03400 DNA repair and recombination proteins [BR:
adn03400
]
Alide_0463
Enzymes [BR:
adn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Alide_0463
Transcription machinery [BR:
adn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Alide_0463
DNA repair and recombination proteins [BR:
adn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Alide_0463
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADU98236
LinkDB
All DBs
Position
482565..486794
Genome browser
AA seq
1409 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKRKEYGDEFVAKM
GAEGIKELLEGIDIEIEIEKLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQLEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYHATREKINGKGEGMVFTDIAEVQRALDAGEV
ELATRISVRLTEWNRNKATGEFEPETKLVETTVGRALLSEILPKGLAFSNLNKALKKKEI
SRLINASFRKCGLKETVVFADKLLQNGFRLATRAGISICVDDMLVPPQKAEIIGRAEREV
KEIEQQYVSGLVTAGERYNKVVDIWGKAGDEVSKVMMQQLAKQKTTDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCGTSNGSLMRAIVEGGEVIESLRERILG
RVAAEDVLHPETRAVLVPAGRMLDEDLIEEIEAAGVDEVKVRTALTCETRYGLCAKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGVIGFN
ATMRYVTNTKGELVVIARSGEVIIQDEHGRERERHKVPYGATLTVKADQQIKAGTILANW
DPLTRPIITEFAGTAKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPLVKLI
DGHGQEVKIPGTDHSVTIGFQVGALIQVRDGQEVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEITGTVSFGKETKGKVRLQITDPDGKVWDELVPKEKNVLVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGESSYIAGEQVERSEILNTNEQLQSEGKIPATYTNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKVKDAMDEAERRA
IAEAEAAELASAGAEGAAAEIDGSADAAD
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgccggatgagcatttcgatgccatc
aagatcggcatggcttcgcccgagaagatccgttcgtggtccttcggcgaggtgaagaag
cccgagaccatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgccaag
attttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtggaagtcacgcagaccaaggtgcgccgcgag
cgcatgggccacatcgacctggccgctccctgcgcacacatctggttcctcaagagcctg
cccagccgcctgggcctggtgctggacatgacgctgcgtgacatcgagcgcgtgctgtac
ttcgaggcctacgtggtgaccgatcccggcatgacgccgctgaagaagttcagcatcatg
agcgaggacgactacgacgccaagcgcaaggagtacggcgatgagttcgtcgccaagatg
ggcgccgagggcatcaaggaactgctcgaaggcatcgacatcgagatcgagatcgagaag
ctgcgcggcgacctgaccggctccgaggtcaaggtcaagaagaacgccaagcgcctgaag
gtcctcgaagcgttcaagaagtccggcatcaagcccgagtggatggtgctggaggtgctg
cccgtgctgccgccagacctgcgtccgctggtgccgctcgatggcgggcgcttcgcgacg
tcggacctgaacgacctgtaccgccgcgtcatcaaccgcaacagccgtctgcgccgcctg
ctcgaactcaaggcgcccgagatcatcgcgcgcaacgaaaagcgcatgctgcaggaggcc
gtcgattcgctgctggacaacggccgccgcggcaaggccatgacgggcgcgaacaagcgc
gcgctcaagtccctggccgacatgatcaagggcaagagcggccgcttccgccagaacctg
ctgggcaagcgcgtggactactcgggccgctcggtcatcaccgtgggcccgacgctcaag
ctgcaccagtgcggcctgcccaagctcatggcgctggagctgttcaagcccttcatcttc
tcgcgcctggaggcgatgggcatcgccacgaccatcaaggccgccaagaaggaagtggaa
gccggcacgcccgtggtgtgggacatcctggaagaggtcatcaaggagcacccggtcatg
ctgaaccgtgctcccacgctgcaccgcctgggcatccaggcgttcgagccgatcttgatc
gaaggcaaggccatccagctgcacccgctggtctgcgcggccttcaacgccgacttcgac
ggtgaccagatggccgtgcacgtgccgctgtccgtcgaggcgcagctcgaggcgcgcacg
ctgatgctggcgtcgaacaacgtgctgttcccggcctcgggcgagccgtcgatcgtgccg
tcgcaggacgtggtgctgggcctgtaccacgccacccgcgagaagattaacggcaagggc
gagggcatggtgttcaccgacatcgctgaggtccagcgcgcgctggatgcaggcgaggtc
gagctggccaccaggatcagcgtccgcctgaccgagtggaacaggaacaaggccacgggc
gagttcgagcccgagaccaagctcgtcgagaccacagtgggccgcgcactgctgtccgag
atcctgcccaagggcctggccttctccaacctgaacaaggcgctgaagaagaaggaaatc
tcgcgcctcatcaacgcctcgttccgcaagtgcggcctgaaggaaaccgtggtgttcgca
gacaagctgctgcagaacggcttccgcctggccacgcgcgcgggcatctcgatctgcgtg
gacgacatgcttgtgccgccgcagaaggccgagatcatcggccgtgccgagcgggaggtg
aaggagatcgagcagcagtacgtctcgggcctggtgacggccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtctccaaggtcatgatgcagcagctc
gccaagcagaagaccaccgaccgccacggcaaggaagtggaccaggagtcgttcaattcc
atctacatgatggccgactcgggcgcccgcggctccgcggcgcagatccgccagctggcc
ggcatgcgcggcctgatggccaagcccgacggctccatcatcgagacgcccatcaccgcg
aacttccgcgagggcctgaacgtgctgcagtacttcatctccacgcacggcgcccgcaag
ggcctggccgacacggcgctgaagacggccaactcgggttacctcacgcgccgcctggtg
gatgtgacccaggacctggtggtgaccgaggaggactgcggcacctccaacggctcgctg
atgcgcgccatcgtcgagggcggcgaggtcatcgagtcgctgcgcgagcgcatcctgggc
cgcgtcgcggccgaggacgtgctgcaccccgagacccgtgccgtgctggtgcccgccggc
cgcatgctggacgaggacctgatcgaggaaatcgaggccgctggcgtggacgaggtcaag
gtgcgcaccgcgctgacctgcgagacgcgctacggcttgtgcgccaagtgctacggccgc
gacctgggccgcggcggcctgatcaacctcggcgaggccgtgggcgtgatcgccgcccag
tccatcggcgagcccggcacgcagctgaccatgcgcacgttccacatcggcggcgcggca
tcgcgcgcggccgtggcgtccagcgtcgaggccaagagcaacggtgtcatcggcttcaac
gccacgatgcgctacgtgaccaacaccaagggcgagctggtggtgatcgctcgctccggc
gaggtcatcattcaggacgagcatggccgcgagcgcgagcgccacaaggtgccctacggc
gccacgctgacggtgaaggccgaccagcagatcaaggccggcaccatcctggccaactgg
gatccgctgacccgtcccatcatcaccgagttcgccggcacggccaagttcgagaacgtc
gaggaaggcctgacggtggccaagcaggtggacgaggtcacgggcctgtccacgctggtg
gtgatcgaccccaagcgccgcggctccgccaaggtggtgcgtccgctggtcaagctcatc
gatggccacggccaggaggtgaagatccccggcaccgaccattcggtgacgatcggcttc
caggtgggcgcgctgatccaggtgcgcgacggccaggaagtgggccccggcgaagtgctg
gcgcgcatccccgttgaaggccagaagacccgcgacatcacgggcggcctgccgcgcgtg
gccgagctgttcgaggctcgcagtcccaaggacaagggcatgctggccgagatcaccggc
accgtgtcgttcggcaaggagaccaagggcaaggtgcgcctgcagatcaccgacccggac
ggcaaggtgtgggatgaactcgtgcccaaagaaaagaacgtgctggtgcacgagggccag
gtcgtcaacaagggcgagctgatcgtggacggcccggccgatccgcaggacatcctgcgc
ctgctgggcatcgaggagctctcgcgctacatcgtcgatgaggtgcaggacgtgtaccgc
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgagaaccccggcgagtccagctacatcgcgggcgagcaggtcgagcgt
tcggagatcctcaacaccaacgagcagctgcagtccgagggcaagattcccgccacgtac
accaacgtgctgctgggcatcaccaaggcgtcgctgtccaccgactcgttcatctccgcc
gcgtcgttccaggaaacgacccgcgtgctcaccgaggctgccatcatgggcaagcgcgac
gagctgcgcggcctgaaggagaacgtcatcgtcggtcgcctgatccctgcaggcacgggc
ctggcctaccaccaggcgcgcaaggtcaaggacgccatggacgaggccgagcgccgcgcc
atcgccgaggccgaggccgccgagctggccagcgcgggtgccgagggcgcggccgccgag
atagacggcagcgccgacgcggcggattaa
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integrated database retrieval system
