Alicycliphilus denitrificans BC: Alide_1042
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Entry
Alide_1042 CDS
T01397
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alide_1042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adn03019
]
Alide_1042
03016 Transfer RNA biogenesis [BR:
adn03016
]
Alide_1042
Enzymes [BR:
adn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Alide_1042
Messenger RNA biogenesis [BR:
adn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Alide_1042
Transfer RNA biogenesis [BR:
adn03016
]
Prokaryotic type
tRNA degradation factors
Alide_1042
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
KH_2
S1_TP0910
DUF5813
KH-I_KHDC4-BBP
KH_NusA_2nd
OB_RRP5_4th
KH_KhpA-B
CCDC110
Motif
Other DBs
NCBI-ProteinID:
ADU98807
LinkDB
All DBs
Position
1108563..1110758
Genome browser
AA seq
731 aa
AA seq
DB search
MTMFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTI
SLNPEVDADIAAMIATSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLV
VAGTETAVLMVESEALQLPEDVMLGAVVYGHEQGKIAIDAIHELVRDAGKPVWDWQPEAK
DEALIAKVAELGEGTLRAAYQNRNKQLRTQACREAYAAVKAGLTEQGVEFDAVKVDNMLF
DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRTSVLPRTHGSALFTRGETQALVVSTLGT
ERDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREVGHGRLAKRALVACLPSK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVL
TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEISSFAPKLFTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIA
ATEAAKADEAKRRIEEITAEVEIGKVYEGPVTKVLDFGALINLLPGKDGLLHISQIAHER
VERVGDYLQEGQIVKVKVLETDDKGRVKLSMKALAERPAGLPEREPREPREPREPRGERR
ERRDNGAPEQQ
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgttcaacaaagtcaccaagaccttccagtggggccagcatacggtcaccatg
gagacgggcgagatcgcccgccaggcatccggcgccgtgctggtcaatatcgacgacacc
gtggtgctggctaccgtggtggcgtccaagaacgccaagccgggccaggacttcttcccg
ctgaccgtggactacatcgagaagacctacgccgccggcaagatccccggcagcttcttc
aagcgcgaggccaagcccagcgagctggagacgctgaccagccgcctgatcgaccgcccg
atccgcccgctgttccccgaaggcttctacaacgaagtccatgtggtcatccacaccatc
tcgctcaaccccgaggtggacgccgacatcgccgcgatgatcgccacgagcgccgccctg
tcggtgtcgggcattccgttcaacggccccatcggcgccgcgcgcgtgggctacatcaat
ggtgagtacgtgctcaaccccggccagacggcgcgcaagaacagccagatggacttggtc
gtcgccggcaccgagaccgccgtgctgatggtcgagtccgaggccctgcaactacccgag
gacgtgatgctcggcgccgtggtctatggccacgagcagggcaagatcgccatcgacgcc
atccacgaactggtgcgcgacgcgggcaagcctgtgtgggactggcagcctgaggccaag
gacgaggccctgatcgccaaggtggccgagctgggcgaaggcacgctgcgcgccgcctac
cagaaccgcaacaagcaattgcgcacgcaggcctgccgcgaggcctatgccgccgtgaag
gctggcctgacggagcagggcgtggagttcgacgccgtcaaggtcgacaacatgttgttc
gacatcgaggcgcgcatcgtgcgctcgcagatcctcgcgggcgagccgcgcatcgatggc
cgcgacacgcgcaccgtgcgccccatcgagatccgcacctcggtgctgccgcgcacccat
ggctcggccctgttcacgcgtggcgagacccaggccctggtcgtctccaccctgggcaca
gagcgcgacgcgcagcgcatcgacgcgctggccggcgagttcgaggaccgcttcctgttc
cactacaacatgcctccgttcgccaccggcgaagtgggccgcatgggctcgaccaagcgc
cgcgaggtcggccatggccgcctggccaagcgcgccctggtggcctgcctgccgagcaag
gaagagttcccctacaccatccgcgtggtgtccgagatcaccgaatccaacggctcctcg
tccatggcctccgtctgcggcggctgcctgtcgatgatggatgcgggcgtgcccatgaag
gcgcacgtggccggcatcgccatgggcctgatcaaggaagacaacaagttcgccgtgctc
accgacatcctgggcgacgaggaccacctgggtgacatggacttcaaggtggccggtacc
acggccggcatcaccgccctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgcgctggcccaggccaaggaagcgcgcatgcacatcctcgggaagatgcag
gaagccatgggcgaggccaagaccgagatcagcagcttcgcgcccaagctcttcacgatg
aagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgccaccatccgtgcg
ctcaccgacgagaccggctgccagatcaacatcgaggaagacggcaccatcaccatcgcc
gctaccgaggctgccaaggccgacgaggccaagcgccgcatcgaggagatcacggccgag
gtcgagatcggcaaggtctacgaaggcccggtcaccaaggtcctggacttcggtgcgctg
atcaacctgctgcctggcaaggacggcctgctgcacatcagccagatcgcccacgagcgc
gtggagagggtcggcgattacctgcaggaaggccagatcgtcaaggtcaaggtgctggag
accgacgacaagggccgcgtcaagttgtccatgaaggcgctcgccgagcgccccgcgggc
ctgccggaacgcgagccgcgcgagccccgtgaaccgcgtgagccccgtggcgaacgccgt
gagcgccgggacaatggcgcgccggagcagcagtaa
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