Alicycliphilus denitrificans BC: Alide_1447
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Entry
Alide_1447 CDS
T01397
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alide_1447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adn03019
]
Alide_1447
Enzymes [BR:
adn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Alide_1447
Messenger RNA biogenesis [BR:
adn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Alide_1447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
Fe-ADH
AAA_25
P-loop_SecA
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ADU99207
LinkDB
All DBs
Position
complement(1518157..1519851)
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AA seq
564 aa
AA seq
DB search
MTFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRTYGKHLDIKSTVIFGGVGMNPQ
IERIKRGVDVLVATPGRLLDLQQQGFIDLSQVEILVLDEADRMLDMGFIHDVKKVLALLP
KAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLH
IIQEHDWSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIRA
LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEGFMM
EIERFTKQEIPVQVIEGFGPDEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARQEM
MERIRTNKATQGAPRGGRQGGQGEGQRATQGQGGGAGRGGNGGRPAGRGQQQPRNAGEGR
RGGGNGGGGGNRRFDDSQPRSENAHLGTQLAHVNLGPRHGGNRTSQPDPMRTSVDSMADR
GRRGGFRSGGGGGGRGSRGGGFGR
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaagaactgaagctggcgccggccattttgcaggccgtgcaagaacagggt
taccagaacccgacccccatccaggcccaggccattcccgccgtcctcgcaggccacgat
ctgctcgccggcgcgcagaccggcaccggcaagacagccgccttcaccctgcccatgctg
caccgcctggcccagggccaggcccccacgagcaggttcggcggccgcggcgtgcgcgcc
ctggtactcacccccacgcgcgagctcgcggcgcaggtcgaggaatccgtgcgcacctac
ggcaagcacctggacatcaagtccaccgtgatcttcggcggcgtgggcatgaacccgcag
atcgagcgcatcaagcgcggcgtggacgtgctcgtggccacgcccgggcgcctgctggac
ctgcagcagcagggcttcatagacctgtcccaggtcgagatcctggtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaaagtgctggcgttgctgccc
aaggccaagcaaagcctgctgttctcggccaccttcagcgacgagatccgcgaactggcc
gcaggcctgctgaacgacccgcaaagcatccaggtcacgccgcgcaataccacggtgcag
cgcatcagccaagtcatccaccccgtgggccggggcaagaagaagcaggtgctgctgcac
atcatccaggagcacgactggagccaggtgctggtgttcacgcgcaccaagttcggcgcc
aacaacgtcgccgaatacctgaccaagcacggcgtgcaggccatggcgctgcacggcaac
aagagccagagcgcccgcacgcaggccctggaaggcttcaagagcggccagatccgtgcc
ctggtggctacggacatcgcggcacgcggcatcgacattgacgacctgccgcatgtcgtg
aactacgagatccccaacgtgcccgaggactacgtgcaccgcatcggccgcaccggccgc
gccggcaaggaaggccaggccgtgagcctggtctgcatggacgaggaaggcttcatgatg
gagatcgagcgcttcaccaaacaggagatccccgtgcaggtcatcgagggcttcggcccc
gacgagggcgagaaggccgagcccatcgccatgggccgccagaccatctggggcggcgcc
ggcaagccgccgagccgcgaagtcatgcaggcggccgccaaggcagcgcgccaggaaatg
atggagcgcatccgcaccaacaaggcaacccagggcgcgccgcgcggcggccgccagggc
ggccagggtgaaggccagcgcgcgacccagggccagggcggcggcgcaggccgtggcggc
aacggcggccggccggcaggccgcggccagcagcagccccgcaacgccggcgaagggcgc
cgcggcggcggcaatggcggtggcggcggcaaccgccgtttcgacgacagccagccgcgc
agcgagaacgcccacctgggcacccagctcgcgcacgtgaacctgggcccgcgccacggc
ggcaaccgcaccagccagcccgaccccatgcgcaccagcgtcgacagcatggccgaccgt
gggcgccgcgggggcttccgcagcggcggtggcggcggcgggcgcggctcgcgcggcggc
ggcttcggccgctga
DBGET
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