Alicycliphilus denitrificans BC: Alide_2480
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Entry
Alide_2480 CDS
T01397
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alide_2480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adn03021
]
Alide_2480
03019 Messenger RNA biogenesis [BR:
adn03019
]
Alide_2480
Transcription machinery [BR:
adn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Alide_2480
Messenger RNA biogenesis [BR:
adn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Alide_2480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
Spore_III_AA
AAA_22
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADV00214
LinkDB
All DBs
Position
2556159..2557421
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEALEIENGGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDSSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVN
GGPPEQNKHKVMFENLTPLFPKEQMRLERDIKSDENITGRIIDIIAPIGRGQRALIVAPP
KSGKTMMMQHIAHAITANHPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLSRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIEAMELMIKNMKATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaatgaactcaaggcactgcacgtgtctgaagtcctcaagcaggccgaagcg
cttgagatcgaaaacggcggccgcatgcgcaagcaggagctcatgttcgccatcatcaag
aagcgcgccaaggccggcgagcaggtgtttgccgacggcgtgctcgagatcctgcccgat
ggattcggcttcctgcgcagtcccgattccagctacaccgccagcaccgacgacatctac
atcagccccagccaggtgcggcgcttcaacctgcacaccggcgacatgatcgagggcgag
gtgcgcacgcccaaggacggcgagcgctacttcgcgctgaccaagctcgactccgtcaac
ggcggcccgcccgagcagaacaagcacaaggtgatgttcgagaacctcacgccgctgttc
cccaaggagcagatgcggctggagcgcgacatcaagagcgacgagaacatcaccggccgc
atcatcgacatcatcgcccccatcggccgcggccagcgcgcgctcatcgtcgcgccccca
aagagcggcaagacgatgatgatgcagcacatcgcccacgccatcacggccaaccacccc
gacgtgcacctcatggtgctgctcgtggacgagcgccccgaggaagtgaccgagatgcag
cgctcggtcaagggcgagatcatcgcctccaccttcgacgagcccgccgcgcgccacgtg
cacgtggccgagatggtgatcgagcgcgccaagcgcctcgtggagctgaagaaggacgtg
gtgatcctgctcgactccatcacccgcctggcgcgcgcctacaacaacgtcgtgccctcg
tcgggcaaggtgctctcgggcggcgtggactccaacgcgctgcagcgccccaaacgcttc
ttcggcgcggcgcgcaaggtcgaggaaggtggaagcctgaccatcatcgccacggccctg
gtcgataccggcagccgcatggacgaggtgatcttcgaagagttcaagggcacgggcaac
tgcgaaatccatctgagccggcgcctgtacgagaagcgcgtgttccccgccatcgagctc
aacaagagcggcacgcgccgcgaggaactgctgctcgcgcccgagatcctgcagaagacc
cgcatcctgcgccagttcatgtacaacatggacgagatcgaggcgatggagctcatgatc
aagaacatgaaggccaccaagaccaacgtggacttcttcgacatgatgcgccggggcggc
tga
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