Alicycliphilus denitrificans BC: Alide_2598
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Entry
Alide_2598 CDS
T01397
Name
(GenBank) AlkA domain protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Alide_2598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
adn03000
]
Alide_2598
03400 DNA repair and recombination proteins [BR:
adn03400
]
Alide_2598
Enzymes [BR:
adn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Alide_2598
Transcription factors [BR:
adn03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Alide_2598
DNA repair and recombination proteins [BR:
adn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Alide_2598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
RecR_HhH
HHH
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ADV00331
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All DBs
Position
2676402..2677901
Genome browser
AA seq
499 aa
AA seq
DB search
MPSDFRADDDDARYLALKARDARFDGRFFTGVTSTGIYCRPVCAVRTPRRENCRFFALAA
QAESAGFRPCLRCRPELAPQALAWSVQDASGILVRQALRLLDAPEAWGAEGGGALVAQLA
ARLGVSDRHLRRIFGEALGVSPLQYLQTRRLLAAKQLLTDTALPVTQVALASGFASVRRF
NAAFGAHYGLNPTQLRRQGAPAGGAGRPVRLGYRPPYDAAALLGFLAARRIHGMEEVEGL
ALRRTVRLRAGGAAYTGWIGARFDPGRPLVLLEASPGLLPALPQVIARVRALLDLDADPG
PINAALHAAFPGGDGLRVPGAWDGFELAVRAVLGQQITVAAARTLAQRLVERFGEPVQTP
WPGLDRLFPAPAVLAAAQGDALGQLGIVRQRQAAIVALAQAVDGGRIALHAGSDVDATLA
ALRQLPGIGDWTAQYIAMRALRWPDAFPAGDVALHKALAVQGAPQPARAALAAAQAWRPW
RSYGVIRAWAGLAAPLPNL
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgccctccgattttcgcgccgacgatgacgacgcccgctacctggccctgaaggcgcgc
gacgcgcgcttcgacgggcgcttcttcacgggcgtcacgtccaccggcatctactgccgc
cccgtctgcgccgtgcgcacgccgcggcgcgagaactgccgcttcttcgcgctggccgcg
caggccgagagcgcgggcttccggccctgcctgcgctgccggccggagctcgcgccgcag
gcgctcgcgtggtcggtgcaggacgcctcgggcatcctcgtgcggcaggcgctgcggctg
ctggacgcgcccgaagcctggggcgcggaaggcggcggcgccctggtggcgcagctggcc
gcgcgcctgggcgtgagcgaccggcatctgcgccgcatcttcggcgaggcgctgggcgtc
tcgcccctgcaatacctgcagactcgccgcctgctggccgccaagcagctgctgaccgac
acggccctgcccgtcacccaggtggcgctggccagcggcttcgcaagcgtgcggcgcttc
aacgcggccttcggcgcgcactacgggctcaaccccacgcagctgcgccgccagggcgcg
ccggcgggcggcgccggccggccggtgcggctgggctaccggccgccctacgacgcggcg
gcgctgctgggcttcctcgcggcgcggcgcatccacggcatggaagaagtcgagggcctg
gcactgcgccgcaccgtgcggctgcgggccggcggcgcggcgtacactggctggatcggc
gcgcgcttcgaccccggccggcccctggtgctgctggaggccagccccggcctgctgccc
gctctgccccaggtgatcgcccgcgtgcgcgcgctgctcgacctggacgccgatcccggg
cccatcaacgccgcgctgcacgccgcattccccgggggcgacggcctgcgcgtgccgggc
gcgtgggacggctttgaactggccgtgcgcgccgtgctgggccagcagatcacggtggcg
gccgcgcgcacgctcgcgcagcggctggtggagcgcttcggcgagcccgtccagacgccc
tggccgggactggatcggctgttccccgcgcccgccgtgctcgcggcggcgcagggcgac
gcgctcgggcagctcggcatcgtgcgccagcggcaggcggccatcgtggcgctggcgcag
gccgtggacggaggccggatcgccctgcacgcgggcagcgacgtggacgccaccctggcc
gcgctgcgccagctgcccggcatcggcgactggacggcccagtacatcgccatgcgcgcg
ctgcgctggcccgacgccttccccgccggcgacgtggcgctgcacaaggccctggccgtg
caaggcgcgccgcagcccgcgcgcgcggccctcgcggcggcgcaggcctggcggccctgg
cgcagctacggcgtgatccgggcctgggcgggcctggcggcaccgctcccgaacctatag
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