Entry |
|
Name |
(GenBank) AlkA domain protein
|
KO |
K13529 | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] |
|
Organism |
adn Alicycliphilus denitrificans BC
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:adn00001]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Alide_2598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:adn03000]
Alide_2598
03400 DNA repair and recombination proteins [BR:adn03400]
Alide_2598
Enzymes [BR:adn01000]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Alide_2598
Transcription factors [BR:adn03000]
Prokaryotic type
Helix-turn-helix
AraC family
Alide_2598
DNA repair and recombination proteins [BR:adn03400]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Alide_2598
|
SSDB |
|
Motif |
|
Other DBs |
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LinkDB |
|
Position |
2676402..2677901
|
AA seq |
499 aa
MPSDFRADDDDARYLALKARDARFDGRFFTGVTSTGIYCRPVCAVRTPRRENCRFFALAA
QAESAGFRPCLRCRPELAPQALAWSVQDASGILVRQALRLLDAPEAWGAEGGGALVAQLA
ARLGVSDRHLRRIFGEALGVSPLQYLQTRRLLAAKQLLTDTALPVTQVALASGFASVRRF
NAAFGAHYGLNPTQLRRQGAPAGGAGRPVRLGYRPPYDAAALLGFLAARRIHGMEEVEGL
ALRRTVRLRAGGAAYTGWIGARFDPGRPLVLLEASPGLLPALPQVIARVRALLDLDADPG
PINAALHAAFPGGDGLRVPGAWDGFELAVRAVLGQQITVAAARTLAQRLVERFGEPVQTP
WPGLDRLFPAPAVLAAAQGDALGQLGIVRQRQAAIVALAQAVDGGRIALHAGSDVDATLA
ALRQLPGIGDWTAQYIAMRALRWPDAFPAGDVALHKALAVQGAPQPARAALAAAQAWRPW
RSYGVIRAWAGLAAPLPNL |
NT seq |
1500 nt +upstreamnt +downstreamnt
atgccctccgattttcgcgccgacgatgacgacgcccgctacctggccctgaaggcgcgc
gacgcgcgcttcgacgggcgcttcttcacgggcgtcacgtccaccggcatctactgccgc
cccgtctgcgccgtgcgcacgccgcggcgcgagaactgccgcttcttcgcgctggccgcg
caggccgagagcgcgggcttccggccctgcctgcgctgccggccggagctcgcgccgcag
gcgctcgcgtggtcggtgcaggacgcctcgggcatcctcgtgcggcaggcgctgcggctg
ctggacgcgcccgaagcctggggcgcggaaggcggcggcgccctggtggcgcagctggcc
gcgcgcctgggcgtgagcgaccggcatctgcgccgcatcttcggcgaggcgctgggcgtc
tcgcccctgcaatacctgcagactcgccgcctgctggccgccaagcagctgctgaccgac
acggccctgcccgtcacccaggtggcgctggccagcggcttcgcaagcgtgcggcgcttc
aacgcggccttcggcgcgcactacgggctcaaccccacgcagctgcgccgccagggcgcg
ccggcgggcggcgccggccggccggtgcggctgggctaccggccgccctacgacgcggcg
gcgctgctgggcttcctcgcggcgcggcgcatccacggcatggaagaagtcgagggcctg
gcactgcgccgcaccgtgcggctgcgggccggcggcgcggcgtacactggctggatcggc
gcgcgcttcgaccccggccggcccctggtgctgctggaggccagccccggcctgctgccc
gctctgccccaggtgatcgcccgcgtgcgcgcgctgctcgacctggacgccgatcccggg
cccatcaacgccgcgctgcacgccgcattccccgggggcgacggcctgcgcgtgccgggc
gcgtgggacggctttgaactggccgtgcgcgccgtgctgggccagcagatcacggtggcg
gccgcgcgcacgctcgcgcagcggctggtggagcgcttcggcgagcccgtccagacgccc
tggccgggactggatcggctgttccccgcgcccgccgtgctcgcggcggcgcagggcgac
gcgctcgggcagctcggcatcgtgcgccagcggcaggcggccatcgtggcgctggcgcag
gccgtggacggaggccggatcgccctgcacgcgggcagcgacgtggacgccaccctggcc
gcgctgcgccagctgcccggcatcggcgactggacggcccagtacatcgccatgcgcgcg
ctgcgctggcccgacgccttccccgccggcgacgtggcgctgcacaaggccctggccgtg
caaggcgcgccgcagcccgcgcgcgcggccctcgcggcggcgcaggcctggcggccctgg
cgcagctacggcgtgatccgggcctgggcgggcctggcggcaccgctcccgaacctatag |