Alicycliphilus denitrificans BC: Alide_3196
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Entry
Alide_3196 CDS
T01397
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alide_3196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adn03019
]
Alide_3196
03009 Ribosome biogenesis [BR:
adn03009
]
Alide_3196
Enzymes [BR:
adn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Alide_3196
Messenger RNA biogenesis [BR:
adn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Alide_3196
Ribosome biogenesis [BR:
adn03009
]
Prokaryotic type
rRNA processing factors
Alide_3196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
ADV00918
LinkDB
All DBs
Position
3328209..3331277
Genome browser
AA seq
1022 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWNAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAQ
QFMQHVMPEHAARVKRYRDDAPLFSRFQIEHQIESAYARTVNLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGAISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQ
MLRMIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVNVVLIPNKTLETPH
YKLERLKHDDPRLENLDASYKLADVVEEQTRVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPEGAQRGAARGQGQQQQAAAAPAPAQPRPAPAPAPEQGFFAWLKSLFGFGPAPSPAPV
ATPAPQPAEPAARGEARRGGERGNRRGGERSGSRDANREGAGAEGRGRRGERQAEGRDTR
EPRNGRDGERRSERTESEGRREGRGGRDRGERGTQQPAQAAADLAVNAEATATQERGERA
PRNGERGERGERRERGERGERSRERGPRTIDADAPAATATATATATAAADFADTAPLTSL
PDLDLTANETASATPEAANGGEERRERRSRDRYGRDRRERGERGARAAEAASAAPLMEFD
LPAAQAEAPADAEPAPEPARRSYFAAPAAQPAAAPAAEPIAAPVAAEPAAAAPVAPPAPE
QAVTVAGIAPASAEPEAVAVSAPSAQAEEPAPTGGMPRVQAFTLPVDSLIQVAQASGLEW
VNSDAGKIAAAQAAIAAEPKPVRVPRERPPAPVLDEGPLVLVETRRDLRDMQLPFEKEGT
AA
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgccacgcagcccgaggagcggcgcctggccatcgtggac
ggccagaagctgctggactacgagatcgagatcgaagggcgcgagcagcgcaagggcaac
atctacaaggccgtggtcacgcgcgtggagccgtcgctggaggcctgcttcgtcgactac
ggcgaggaccgccacggcttcctgccgttcaaggaaatctccaagcagtacttctccgag
ggcgtctcgcccagccaggcgcgcatcaacgacgtgatcagggaaggccaggagctcatc
gtccaggtcgagaaggaggagcgcggcaacaagggcgcggcgctgaccaccttcatcagc
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggcggcggcgtctcgcgc
cgcatcgagggcgaggaccgcgccgagctgaaagaggcgatggaccagctcgaatacccc
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgcagcgcgcccgagctgcag
tgggacctgaactacctgctcaagctctggaacgccatcgacggcgcggccaaggccggc
aagggcgcgttcctgatctaccaggagtcgagcctggtgatccgcgccatccgcgactac
ttcaacagcgacatcggcgacatcctgatcgacaccgacgacatctacgaacaggcgcag
cagttcatgcagcacgtcatgcccgagcatgccgcccgcgtgaagcgctaccgcgacgac
gcgccgctgttctcgcgcttccagatcgagcaccagatcgaatccgcctatgcgcgcacc
gtcaacctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtcagcgtg
gacgtgaactccgcgcgcgccatcaagggcggcgacatcgaggagaccgccacgcgcacc
aacctggaggccgccgacgaggtggcgcgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggaatcgaaaaaccgccgcgaggtcgagaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcgcgcgtgcagttcggcgccatcagcaagttc
ggcctcatggagatgagccgccagcgcctcaagccctcgctgtccgaaggcgctcacatc
cgctgcccgctgtgcgacggcaccggccacgtgcgcgatacggaaggcttctcgctgcag
atgctgcgcatgatccaggaagagtccatgaaggacaacaccgccgccgtgcactgccag
gtgcccgtggaggtggcgagcttcctgctcaacgagaagcgcaccgagatcgccaagatc
gagctcaagcagcgcgtcaacgtggtgctgattcccaacaagacgctggagacgccgcac
tacaagctcgaacgcctcaagcacgacgacccgcgtctggagaacctggacgccagctac
aagctggccgacgtggtcgaagagcagacccgcgtcacgcgccgctcgcaggagccgacc
aacaagcagaccccggtgatcaagggcgtactgcccgacgcgcccgcccccgtggccgag
ccgcgccccgagggcgcccagcgcggcgccgcgcgcggccagggccagcagcaacaggct
gcggcggcacccgcccctgcgcagccgcgccccgcaccggcgcccgcgccggaacagggc
ttcttcgcctggctcaagagcctgttcggcttcggcccggcaccctcgcccgcccccgtg
gccacgccggcgccgcagccggccgagccggcggcacgtggcgaggcgcgccgcggcggc
gagcgcggcaaccgccgcggcggcgagcgcagcggcagccgtgacgcgaaccgcgaaggc
gccggcgccgaaggccgcggccgccgtggcgaacgccaggccgaaggccgcgacacccgc
gagccgcgcaacggccgcgacggcgagcgccgcagcgaacgcaccgagagcgaaggccgg
cgcgaaggccgtggcggccgtgatcgcggcgagcgcggcacgcagcagccggcacaggcc
gccgccgacctggcggtgaacgcggaagccacggcaacgcaggagcgcggcgaacgcgcc
ccgcgcaacggcgaacgcggcgaacgtggagagcgccgggaacgtggcgaacgcggtgaa
cgcagccgcgagcgcggcccccgcaccatcgatgcggacgcaccggccgccaccgccacc
gccaccgccaccgccaccgccgctgccgacttcgccgataccgcgccgctgacctcgctg
cccgacctggacctgacggccaacgagaccgcgtccgccacgcccgaggccgccaacggc
ggtgaggagcgccgcgaacgccgctcgcgcgaccgctatggccgtgaccggcgcgagcgt
ggcgagcgcggcgcacgcgctgccgaggctgcgagcgcggccccgctgatggagttcgac
ctgcccgcggcgcaagccgaggccccggcggacgcggagcccgcgcccgaaccggcacgc
cgcagctacttcgcggcaccggcggcgcagcccgccgctgcaccggccgccgagcccatc
gccgcgcccgtggcggcagagcctgccgcagcagccccggtggcgccccccgcccccgag
caggccgtgaccgtggccgggatagcgcccgccagcgccgagcccgaggccgtggccgtt
tctgccccctcggcacaggccgaagagccggcaccgaccggcggcatgccgcgcgtgcag
gccttcacgctgcccgtggattcgctgatccaggtggcgcaggcatcgggcctggagtgg
gtcaactccgacgccgggaagatcgcggccgcccaggccgcgatcgccgccgagcccaag
cccgtgcgcgtgccgcgcgagcggccgcccgcgcctgtgctcgacgagggcccgctggtg
ctcgtggaaacccgccgcgacctgcgcgacatgcaactgcctttcgagaaggaaggcacg
gccgcctga
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