Alicycliphilus denitrificans BC: Alide_3659
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Entry
Alide_3659 CDS
T01397
Name
(GenBank) sigma-54 factor interaction domain-containing protein
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Alide_3659
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
adn02022
]
Alide_3659
02035 Bacterial motility proteins [BR:
adn02035
]
Alide_3659
Two-component system [BR:
adn02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
Alide_3659
Bacterial motility proteins [BR:
adn02035
]
Pilus system
Twitching motility proteins
Alide_3659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_28
HTH_23
HTH_30
AAA
CBP30
AAA_16
PDE8A_N
Motif
Other DBs
NCBI-ProteinID:
ADV01375
LinkDB
All DBs
Position
3807486..3808976
Genome browser
AA seq
496 aa
AA seq
DB search
MNATASAASILVVDDEPDLRTLYELTLLREGYRVETAASVAEAREQLQRRKFDAVITDMR
LPDGLGLDLLYDLREQQRRERCVVMTAYGSAENAVEALRSGAFDYLTKPVDLKQFRSVVA
SAIQGTGGVLPAATPPRMAAQEPDADNPVLARLIGESEAMRNVKQRIAKVARSMAPVLIR
GESGTGKELVARALHASSQRADGPLVAVNCGAIPENLLEAEFFGARKGSYTGSTSDREGY
FQAARGGTLFLDEIGDLPLPMQSKLLRAIQERSIRPLGSTQEETVDVRIVSATHRDLAAD
VQAGRFRQDLYYRLNVIELLIPPLRERREDLPALCEALLARIEQESGTPVPRLGAAALKR
ITQHPLTGNVRELENLLHRAVALSDGNELQVEHPAATTAEVAAAVPAPPPPTPPEAGTPP
APPPTAASEEPPLPSDLQAWLDQHEREILVRALRETGFNRTATAARLGISLRQIRYRIDR
LNIAMPQDGDNHGEAQ
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccactgcctccgccgcctccatcctcgtcgtcgacgacgagcccgacctgcgc
acgctctacgagctgacgctgctgcgcgagggctaccgcgtggagaccgctgccagcgtg
gccgaggcgcgcgagcagttgcagcgccgcaagttcgacgccgtgatcaccgacatgcgg
ctgcccgacggcctggggctggacctgctgtacgacctgcgcgagcagcagcggcgcgag
cgctgcgtggtcatgacggcctacggctcggccgagaacgccgtggaggcgctgcgctcg
ggagcgttcgactacctgaccaagcccgtggacctcaagcagttccgctcggtcgtagcc
tcggccatccagggcacgggcggcgtgctgcccgcggccacgcctccccgcatggccgca
caggagccggacgcggacaacccggtgctcgcgcgcctgatcggcgagtccgaggccatg
cgcaacgtcaagcagcgcatcgccaaggtggcgcgcagcatggcgcccgtgctgattcgc
ggcgaatcgggcacgggcaaggagctggtggcgcgcgccctgcatgccagcagccagcgc
gccgacggtccgctggtcgctgtgaactgcggcgccattcccgagaacctgctcgaagcc
gagttcttcggtgcgcgcaagggctcctacaccggctcgaccagcgaccgcgagggctac
ttccaggccgcccgcggcgggaccttgtttctggacgaaatcggcgacctgccgctgccc
atgcagtccaagctgctgcgcgccatccaggagcgcagcatccgtccgctgggctccacg
caggaagagaccgtggacgtgcgcatcgtcagcgccacgcaccgcgaccttgcggccgac
gtacaggccgggcgctttcgccaggatctgtactaccgcctgaacgtgatcgagctcctg
atcccgccgctgcgcgagcggcgcgaggacctgcccgcgctgtgcgaggcgctgctcgcc
cgcatcgagcaggaatcgggcacccccgtgccgcgcctgggcgccgccgcgctgaagcgc
atcacccagcacccgctcacgggcaatgtgcgcgagctggaaaacctgctgcaccgcgcc
gtggccctgagcgacggaaacgagctacaggtggaacaccccgctgccaccaccgcggag
gtcgccgccgccgtccccgcgcccccgcctccaacgccaccggaggccggcacgcccccc
gcgccgccacccactgccgccagcgaagagccccccctgcccagcgacctgcaggcctgg
ctggaccagcatgagcgcgagatcctcgtgcgcgccctgcgcgagacgggcttcaaccgc
acggccacggcggcgcgcctgggcatcagcctgcgccagatccgctaccgcatcgaccgg
ctcaacatcgccatgccgcaggacggcgacaaccatggcgaagcgcagtag
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