Alicycliphilus denitrificans BC: Alide_3681
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Entry
Alide_3681 CDS
T01397
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
adn
Alicycliphilus denitrificans BC
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
adn03016
]
Alide_3681
Enzymes [BR:
adn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Alide_3681
Transfer RNA biogenesis [BR:
adn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Alide_3681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
ADV01397
LinkDB
All DBs
Position
3831475..3833553
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AA seq
692 aa
AA seq
DB search
MHALFDDAGKFLAGRILSEAESSAQIELDSGKRVKVKAANILLKFDKPAPAELLAQARDV
AASIELPLAWEFAPEDEFGFADLAREYFSANAPVAEQAGMLLALYEAPHYFRRAGKGRFR
KAPAEILQQALAAIEKKKQVQAQIEAWAAELAAGRCPQPIREQLYKILFRPDKNAPEYKA
VVEASRTAHQAPLALLQAAGAIDSPYQFHWKRFLFENFPKGTGFPPLAAPQPPQDLPLAP
VQAYSIDDSATTEIDDALSVQGLGTGTVTLGIHIAAPGLAIQPGGDLDKVGRQRLSTVYM
PGYKITMLPDEVVQIYTLDAGRANPAVSLYVTIDEATLAITGTETRLERVPVTVNLRHDQ
LDHIVTEAWLQDASVQHENTPQPLLDLREQLSFLHRLAKQLKAGREQVRGKPETFNRPDY
NFRLEGNGKAEPTGSETVRITTRQRGAPLDLIVAEAAIVANSTWGQMLAEHGVPGIYRSQ
ASLAPGIKVRMGTKALPHAGIGVKSYAWATSPLRRYVDLVNQWQIIACARHGKTAALAAP
FKPKDAELFSIISSFDATYGAYNGYQAGMERFWTLKYLQQNQVAELDATVIKDGMNGDFL
VRADTLPLVLPVLGAQGLPRGARVRVKLGAIDEITLDVNGTLLARLDDPADQSDDGPVDE
DEEEAVAGPIAIAVDIDETDGTGTEAGAGQPG
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgcatgcactgttcgacgacgccggcaagttccttgccggccgcatcctttccgaggcc
gaaagctcggcgcagatcgagctcgactcgggtaaacgcgtcaaggtcaaggccgccaac
atactgctgaagttcgacaagcccgccccggccgagctgctggcgcaggcgcgcgacgtc
gccgcctccatcgagctgccgctggcctgggagttcgcgcccgaggacgagttcggcttc
gccgacctggcgcgcgagtacttctccgcgaacgcccccgtggccgagcaggccggcatg
ctgctggcgctgtacgaggcgccgcactacttccgccgcgcgggcaaggggcgcttcagg
aaggcgccggccgagatcctgcagcaggccctggccgccatcgagaagaagaagcaggtc
caggcgcagatcgaggcctgggcggccgagctggcggccggccgctgcccgcagcccatc
cgcgagcagctctacaagatactgtttcgccccgacaagaacgcgcccgagtacaaggcc
gtggtcgaggccagccgcacggcgcaccaggcgccgctggcgctgctgcaggcggcgggc
gccatcgattcgccctaccagttccactggaagcgcttcctgttcgagaacttccccaag
ggcacgggctttcccccgctggccgcgccgcagccgccgcaggatctgccgctcgcgccg
gtgcaggcctactccatcgacgattcggccaccaccgagatcgacgacgccctctccgtg
cagggcctgggcacgggcaccgtcacgctgggcatccacatcgccgcgcccggcctggcg
atccagcccgggggcgacctggacaaggtgggccgccagcgcctgtccaccgtctacatg
cccggctacaagatcaccatgctgcccgacgaggtggtgcagatctacacgctggacgcg
ggccgcgccaacccggccgtgtcgctctacgtgaccatcgacgaggcgacgctcgccatc
accggcaccgagacgcgcctggagcgcgtacccgtgacggtgaacctgcgccacgaccag
ctcgaccacatcgtcaccgaggcctggctgcaggacgcctccgttcagcacgaaaacacg
ccccagcccttgctggacctgcgcgagcagctatcattcctgcaccgcttggcaaagcag
ctgaaggccgggcgcgagcaggtgcgcggcaagcccgagaccttcaaccgcccggactac
aacttccgcctggagggcaacggcaaggccgagccgacgggcagcgagacggtgcgcatc
accacgcgccagcgcggcgcgccgctggacctgatcgtggccgaggccgccatcgtcgcc
aacagcacctggggccagatgctggccgagcacggcgtgcccggcatctaccgcagccag
gccagcctggcgcccggcatcaaggtgcgcatgggcaccaaggccctgccgcacgcgggc
atcggcgtgaagagctacgcctgggccacgtcgccgctgcgccgctacgtggacctggtg
aaccagtggcagatcatcgcctgcgcgcgccacggcaagacggccgcgctggccgcgccc
ttcaaaccgaaggacgccgagctgttctccatcattagcagcttcgacgccacctacggc
gcctacaacggctaccaggcgggcatggagcgcttctggacgctcaagtacctgcagcag
aaccaggtcgccgagctggacgccacggtcatcaaggacggcatgaacggcgacttcctc
gtgcgcgccgacaccctgcccctggtgctgcccgtgctgggcgcccagggcctgccgcgc
ggcgcgcgcgtgcgcgtgaagctgggcgccatcgacgagatcacgctggacgtgaacggc
acgctgctcgcgcgcctggacgacccggccgaccagagcgacgacggccccgtggacgag
gacgaggaagaagccgtggcagggcctatcgccatcgcggtggacatcgacgaaaccgat
gggacgggtaccgaggccggcgccggccagccgggataa
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