Alicycliphilus denitrificans BC: Alide_3912
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Entry
Alide_3912 CDS
T01397
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Alide_3912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adn03400
]
Alide_3912
Enzymes [BR:
adn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Alide_3912
DNA repair and recombination proteins [BR:
adn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Alide_3912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_C
PriA_3primeBD
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_19
ADDB_N
UvrD-helicase
SopE_GEF
Glycos_transf_2
Bac_DnaA
HypA
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ADV01620
LinkDB
All DBs
Position
4087481..4089589
Genome browser
AA seq
702 aa
AA seq
DB search
MSDALPCLVQVAVSTPAHSAVGDLLSYACAAPLAPGTLVRVPLGAREVLGVVWDAPAEPL
PLPAGMAPRPVAGVLEGIAPLDAAWRRLVAFTARYYQRALGEVALAALPPQLRELTPEQL
ARRMRRPAVGAAAQARESATESVALSAEQAIAAAEIESNPGPFLLFGSTGSGKTEVYMHC
VARALAASPAAQALVMVPEINLTPQLEARFRARFAPLYGEVAVVSLHSGMTNPQRLKSWL
AAHQGVARIVLGTRMAVFASLPGLALVVADEEHDASYKQQEGARYSARDLAVWRAREQGA
KVILGSATPSLESWHASSPEVGRYQRLAMPARIGAGELPRLRLVDMGQQPRGAVFSPPLL
AAITERVERGEQCLVLLNRRGFAPVLHCHDCGWKSDCPHCSAHQVFHKIDRTLRCHHCGY
AQRVPRACPACGNPDIAPVGRGTEQLEEQLAALLRNVITPGRRAARVARMDADTTRAKGA
LEEQLAQVHAGEVDVLVGTQMVAKGHDFRRITLVAAVQPDGALFSSDFRAPERLFALLMQ
AAGRAGRDAQYVAAQASPPEMWLQTWHPDHAVYAALRRHDYPAFAQQQLAERREAGMPPF
AYQALVRADARTQEAAQAFLQAAADAARAAQLPGLEQVFIFPPVPLTVQRVANVERAQML
LESPGRGALQRFLAAWQPLLHAERARHRALVRWLVDVDPQAI
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgctttgccgtgcctggtgcaggtcgccgtcagcaccccggcccacagcgcc
gtgggcgacctgctgagctatgcctgtgccgccccgctggcgccgggcacgctggtgcgc
gtgccgctgggcgcgcgcgaggtgctgggcgtggtctgggacgcgcccgccgagcccttg
cccctgcctgcgggcatggcgccgcgcccggtggcgggcgtgctcgaaggcatcgccccg
ctcgacgccgcctggcggcgcctggtagccttcacggcgcgctactaccagcgcgccctg
ggcgaggtggcgctggccgccctgccgccgcagctgcgcgagctcacacccgagcagctc
gcgcggcgcatgcgccgccccgcggtcggggcagccgcgcaagcacgtgaatccgctact
gaatcggtagcactcagcgcagagcaggcaatcgccgcagccgaaattgaatccaacccc
ggccccttcctgctgttcggcagcaccggcagcggcaagaccgaggtctacatgcactgc
gtggcccgggcgctggcagccagccccgccgcgcaagccctggtgatggtgcccgagatc
aacctcacaccgcagctggaggcgcgctttcgcgcgcgcttcgcccccctgtacggcgag
gtcgccgtggtcagcctgcacagcggcatgaccaacccgcagcgcctcaagagctggctg
gccgcgcaccagggcgtggcgcgcatcgtactgggcacgcgcatggcggtgttcgccagc
ctgccgggcctggcgctggtcgtggcagacgaggagcacgacgccagctacaagcagcag
gagggcgcgcgctactccgcgcgcgacctggccgtctggcgcgcgcgcgagcagggtgcc
aaggtgatcctgggcagcgccacgccgtcgctggagagctggcacgcgagcagccccgag
gtgggccgctaccagcgcctggccatgcccgcccgcataggcgcgggcgagttgccgcgc
ctgcgcctggtggacatgggccagcagccgcgcggggcagtgttctcgccgccgctgctg
gcggccattaccgagcgcgtggagcgcggcgagcaatgcctggtgctgctcaaccgccgg
ggtttcgcgcccgtgctgcactgccacgactgcggctggaagagcgactgcccgcactgc
agcgcgcaccaggtgttccacaagatcgaccgcacgctgcgctgccaccactgcggctac
gcgcagcgcgtgccgcgcgcctgccccgcgtgcggcaacccggacatcgcccccgtgggc
cggggcacggagcagctggaggagcagctggccgcgctgctgcgcaacgtgatcacgccc
ggacgccgcgccgcgcgcgtggcgcgcatggacgcagacaccacccgcgccaagggcgcg
ctggaggagcagctggcccaggtgcacgcgggcgaggtggacgtgctcgtgggcacgcag
atggtggccaaggggcacgacttccgccgcatcacgctggtggcggccgtacagcccgac
ggagcgctgttctccagcgacttccgcgcgcccgagcgcctgttcgccctgctcatgcag
gccgcgggccgcgccgggcgcgacgcgcaatacgtcgccgcccaggccagcccgcccgag
atgtggctgcagacctggcaccccgaccacgccgtctacgccgcgctgcgccgccacgac
tacccggccttcgcacagcagcagctggccgagcgccgcgaggccggcatgccgcccttc
gcctaccaggccctggtgcgcgccgacgcgcgcacccaggaagcggcccaggccttcctg
caggccgccgccgacgccgcgcgcgcggcgcagctgccggggctggagcaggtgttcatc
ttcccgcccgtgccgctgaccgtgcagcgcgtagccaacgtggagcgcgcgcagatgctg
ctggagagccccggccgcggcgcgctgcagcgcttcctggccgcgtggcagccgctgctg
catgccgagcgcgcgcgccaccgcgccctggtgcgctggctcgtggacgtggatccgcag
gccatttga
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