Alicycliphilus denitrificans BC: Alide_4081
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Entry
Alide_4081 CDS
T01397
Name
(GenBank) RNA polymerase sigma-54 factor, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn02020
Two-component system
adn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Alide_4081
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Alide_4081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adn03021
]
Alide_4081
Transcription machinery [BR:
adn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Alide_4081
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ADV01785
LinkDB
All DBs
Position
complement(4259824..4261377)
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AA seq
517 aa
AA seq
DB search
MKPSLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDENPFLERTVDDASLDEPV
APPSDEGGRRAEDATPSGAADADWTGDEGQNDAQMPDIAAPTDWDGDTDIPGDDREWGSD
APASAGSGSGDGDEADAADLAHGHESLADHLERQALALRLSELDMAALRFLIGSLNDDGY
LDEPLESLAASLADTDDPEQLDELVHRLTVALRLLQSLDPAGVGARGLAECLALQLQALD
REEEGDPEVIQAALCICRQPLDLLARRDVRRLAQACAASDDLTRAAMALIARLEPRPGRR
FADVERNVIVPDVIVRKIGRGAQQSFSVRLNPDVMPRLRVHDVYANALRGGSKGDGHQAL
QARLQEARWFIKNIQQRFDTILRVSSAIVERQKNFFVHGELAMRPLVLREIADELGLHES
TISRVTTAKYMATPQGTFELKYFFGSGLGTETGGSASSTAVRALIRQFVAAEDPHKPLSD
GQIADMLKEQGIECARRTVAKYREALKIAPANLRKAL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccagcctgtcgctgcgcgtctcgcagcacctggcgctcacgccgcagctgcag
cagtccatccgcctgctgcagctgtccacgctggagctggcgcaggaggtcgagcagatg
ctcgacgagaaccccttcctggagcgcacggtggacgacgcgtcgctggatgagccggtc
gcacccccgtcggacgagggcggccgccgggccgaggatgctacgccttcaggagctgct
gacgcagattggacgggcgatgagggccaaaacgatgctcaaatgcccgatatcgccgct
cccaccgactgggacggcgacaccgacataccgggcgacgaccgcgagtggggcagcgat
gcgcccgcaagcgccggcagcggctctggcgatggcgacgaggccgacgccgcggacctg
gcgcacggccacgaatcgctcgcagaccaccttgagcgccaggccctggcgctgcgcctg
tccgagctggacatggcggcgctgcgctttctcatcggctcgctcaacgacgacggctat
ctggacgagccgctcgaatccctggccgcgagcctggcggacacggacgaccccgagcag
ctcgatgagctggtgcaccgcctgaccgtggctctgcgcctgctgcagagcctggacccc
gcgggcgtgggcgcgcgcggcctggccgaatgcctggcgttgcagctgcaggcgctggac
cgggaggaggagggcgaccccgaggtgatccaggccgcgctgtgcatctgccgccagccg
ctcgacctgctggcgcggcgcgacgtgcgccgcctggcccaggcctgcgccgcgagcgac
gacctcacgcgcgccgccatggcgctgatcgcgcggctggagccgcgccccgggcggcgc
ttcgccgacgtggagcgcaacgtcatcgtgcccgacgtgatcgtcaggaagatcgggcgc
ggcgcgcagcagagcttcagcgtccgcctcaaccccgacgtgatgccgcgcctgcgcgtg
cacgacgtctacgccaacgccctgcgcggcggcagcaagggcgacggccaccaggcgctg
caggccaggctgcaggaggcgcgctggttcatcaagaacatacagcagcgcttcgacacc
atcctgcgcgtgtccagcgccatcgtggagcggcagaagaacttcttcgtgcatggcgag
ctggccatgcgcccgctggtgctgcgcgagatcgccgacgagctcggcctgcacgaatcc
accatcagccgcgtgaccacggccaagtacatggccacgccccagggcacgttcgagctc
aagtacttcttcggctcgggcctgggcaccgagaccggcggcagcgcgtcgagcacggcg
gtgcgcgcgctcatccggcagttcgtcgccgccgaggatccgcacaagccgctgtcggac
ggccagatcgccgacatgctcaaggagcagggcatagagtgcgcgcgccgcaccgtggcc
aagtaccgagaggcgctgaagatcgcgcccgccaacctgcgcaaggcgctatag
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