Alicycliphilus denitrificans BC: Alide_4115
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Entry
Alide_4115 CDS
T01397
Name
(GenBank) sigma-54 factor interaction domain-containing protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
adn
Alicycliphilus denitrificans BC
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
adn03000
]
Alide_4115
Transcription factors [BR:
adn03000
]
Prokaryotic type
Helix-turn-helix
Other families
Alide_4115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
AAA_5
PAS_4
HTH_8
AAA_2
Mg_chelatase
HTH_7
AAA
HTH_30
HTH_23
HTH_22
HTH_29
AAA_16
AAA_7
HTH_11
HTH_Tnp_ISL3
sCache_3_3
AAA_3
IclR_C
P22_Cro
NUMOD1
HTH_17
ATPase
NB-ARC
Xre-like-HTH
MCM
HTH_28
Motif
Other DBs
NCBI-ProteinID:
ADV01818
LinkDB
All DBs
Position
complement(4305316..4307289)
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AA seq
657 aa
AA seq
DB search
MSIPLSGPLAQRQGPAPGTLGATQDYTEVIGKAHQRSQRYGVVAWERPDFSTSAQCDLND
VVENNRFLFQYAAPVMETLYEQIANTHSMVLLTTAQGLVLHSLGDKDFLEKASRVALAPG
VDWSEKAKGTNAIGTALSEETAVTVHGEQHYMHANHALTCSCAPIFNPHGQVVGALDVSG
DHRSYHQHTLALVRMSAQMIENQMFAGSFPKAVRLHFHARPEFLGTLVEGIAVFTPEGRF
LSANRSAQFQLGLPFGALQARTFSSLFDLPMSALLELFGGTSDAPRQLHLHSGVSVWCRA
DVKPAGPWAAPTFAERPAAAPARKAQLSSLQYLDTGDTQVAAVIHKLRKVVDRDIPVMIL
GETGTGKDLLAQAFHNDSARARQPFVAVNCASIPESLIEAELFGYEEGAFTGARKKGAIG
KIAQAHGGTLFLDEIGDMPKHLQARLLRVLQERRISPLGAGKEVDVDVAVVCATHKNLKD
LIARSDFREDLYYRLNGLVVRLPALRERTDFECVVRKLLKSLCDDGQHVGISEPVMELFR
SYHWPGNVRQLHNLLRTAVVMVGREGEIAAEHLPDDFLEELHAMQAPALAPACPLPELVL
PGDAGADGHSLQDVTLHAMAQMLRLHKGNVSAAAKALGVSRNTIYRKKNLLPPDLLN
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgagcatccctctttctggcccattggcacagcgacagggtccagcccccggcaccttg
ggggcgacccaggattacacggaggtcataggcaaggcgcatcagcgttcccagcgctat
ggcgtcgtcgcctgggagagaccggacttctccacgtcggcgcagtgcgacctcaacgac
gtggtggagaacaaccgcttcctgttccagtacgccgcgccggtcatggagacgctgtac
gagcagatcgccaacacccacagcatggtgctgctgaccaccgcgcaggggctggtgctg
cattccctgggggacaaggacttcctggaaaaggcctcccgcgttgccctggcgcccggc
gtggactggtcggaaaaggccaagggcaccaatgccataggcacggccctgagcgaggag
acggcggtcacggtgcacggcgagcagcactacatgcacgccaaccacgcgctgacctgc
tcgtgcgcgccgattttcaacccccatggccaggtcgtcggcgcgctggatgtctccggc
gaccaccgcagctaccaccagcacaccctggccctggtgcgcatgtcggcgcagatgatc
gagaaccagatgttcgccggcagctttcccaaggcggtacggctgcacttccatgcgcgc
ccggaattcctgggcaccctggtcgagggcatcgcggtgttcacccccgaggggcgcttc
ctgtcggccaaccgcagcgcacagttccagctgggcctgcctttcggcgccctgcaggcg
cgcaccttctcctcgctgttcgacctgccgatgtcggccttgctggagctgttcggcggg
acctcggatgcgcccaggcagctgcatctgcacagcggcgtttccgtctggtgccgggcc
gacgtcaagccggccggtccctgggcggcccccacgtttgccgagcggcccgccgcggcg
ccggcgcgcaaggcgcagctgtcctcgctgcagtacctggacacgggcgacacccaggtc
gcggcggtgatccacaagctgcgcaaggtggtggaccgcgacataccggtgatgatcctg
ggcgagaccggcaccggcaaggacctgctggcccaggcgtttcacaacgattccgcgcgg
gcgcgccagccgttcgtggcggtcaactgcgcgtccattcccgaatccttgatagaggcc
gagctgttcggctatgaggagggcgccttcaccggcgcgcgcaagaagggcgccatcgga
aagatcgcccaggcccacggcggcaccctgttcctcgacgaaatcggcgacatgcccaag
catctgcaggcgcggctgctgcgcgtgctgcaggagcggcgcatcagccccctgggggcg
ggcaaggaggtggacgtggacgtggcggtggtctgcgccacccacaagaacctcaaggac
ctgatcgcgcgcagcgacttccgcgaggacttgtactatcgcttgaacggcttggtggtg
cgcctgccggcgctgcgcgagcgcacggatttcgaatgcgtggtcaggaagctgctcaag
tcgctgtgcgacgacgggcagcatgtcggtatctccgagccggtcatggaactgttccgc
agctaccactggcccggcaacgtgcgccagctgcacaacctgctgcgcacggcggtggtc
atggtgggccgcgagggggagatcgcggccgagcatctgcccgacgatttcctggaggag
ctgcatgcgatgcaggcgccggcccttgcccccgcatgcccgttacccgaactcgtcctg
ccaggcgatgccggcgccgacggccacagcctgcaggacgtcaccctccatgccatggca
cagatgttgcggctgcacaagggcaatgtatcagcggcggccaaggccctgggggtctcc
cgcaacaccatctaccgcaagaagaacctgctgccgccggacttgctgaactga
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