Actinobacillus delphinicola: NCTC12871_00782
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Entry
NCTC12871_00782 CDS
T06572
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
adp
Actinobacillus delphinicola
Pathway
adp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
adp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12871_00782 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adp03021
]
NCTC12871_00782 (rpoB)
03400 DNA repair and recombination proteins [BR:
adp03400
]
NCTC12871_00782 (rpoB)
Enzymes [BR:
adp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12871_00782 (rpoB)
Transcription machinery [BR:
adp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12871_00782 (rpoB)
DNA repair and recombination proteins [BR:
adp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12871_00782 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
TP_0208_N
SPG4
Motif
Other DBs
NCBI-ProteinID:
VEJ09333
UniProt:
A0A448TU07
LinkDB
All DBs
Position
1:824677..828705
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKNFGKRPQVLHVPYLLTIQIDSFEKFIRRDPEGQQGLEAAFRSVFPIV
SNNGYTELQYVSYQLGQPVFDVRECQIRGTTYSAPLRVKLRLVSYDRDAAPGTIKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVVVSQLHRSPGVFFDSDRGKTHSSGKILFNARIIPYR
GSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKVEFTIDNNKLLMT
LVPERLRGETASFDIEANGKVYVERGRRITARHIKALAKDNVNQVVVPTEYIVGKVAAKE
YLDLETGEIICGANEELTLEILAKLSQAGYKTIETLFTNDLDAGAYISETLRIDPSYDRL
SALVEIYRMMRPGEPPTKEAAEGLFENMFFSPDRYDLSAVGRMKFNRSLGIDDSEGSGVL
SKDDIVRVMKKLIAIRNGNGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDSLTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRKVVNGQVT
EEIEYLSAIEEGKYVIAQANSNLDDDFRFTDAFVTARGEKGESGLFRPDEVQYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPVALDSGVAVTAK
RGGTIQYVDASRIVVKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPCVKLGEPVGR
GEILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVSEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKEAKKD
LMEELEILEAGLFARVRNLLVSSGMDEATLDRMTREQWLDQSLSDEEKQTQLEQLADQYE
ELRKEFEQKLEVQRGKIIQGDDLAPGVLKVVKVYLAVKRRIQPGDKMAGRHGNKGVISKI
NPIEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHLGLAAKGIGDKINAMLKQKQSVE
KLREYMQKAYDLGEGEQKVDLNTFTDEEVMRLAENLRKGLPIATPVFDGADEKEIKGLLE
LGDLPTSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVAGNQQMDPGTP
ESFNVIMKEIRSLGINIDLDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcatataccgaaaaaaaacgtattcgtaagaactttggaaaacgtccacaa
gttttacacgtcccttatttattaacaattcaaattgattcttttgaaaaatttattcgc
agagatcctgaaggacaacaaggactagaagcagcattccgctctgtattcccgattgtg
agtaataatggctatacagaattacaatatgttagctatcagttaggtcaacctgttttt
gatgttcgtgaatgtcaaattcgtggaactacctattctgcacctttacgcgttaaatta
cgtctagtgagctatgatcgtgatgcagctccaggtactattaaagatattaaagaacaa
gaagtgtacatgggcgaaattccattaatgactgataacggaaccttcgttattaatggt
acagaacgtgttgtagtatcacaattacaccgtagtccaggtgtattctttgatagtgat
cgtggtaaaactcactcatcaggtaaaattttatttaacgcacgtattattccttaccgt
ggttcatggttagactttgaattcgatccaaaagataatctttttgctcgtattgaccgt
cgtcgtaaattacctgcaaccattattttacgtgctttaggctacactactgaagaaatt
ttaaacttattcttcgacaaagtagaatttaccattgataacaataaattattaatgact
ttagtacctgaaagattacgtggtgaaactgcatctttcgatattgaagccaatggtaaa
gtttatgttgaacgtggtcgccgtattacagctcgccatatcaaagcattagcaaaagat
aatgtaaatcaagttgttgtaccaactgaatatatcgttggtaaagttgcagcgaaagaa
tacttagatcttgaaactggcgaaattatttgtggtgcaaatgaagagttaaccctagaa
atcttggcgaaactttcacaagctggctacaaaacaattgaaacattatttacaaatgat
cttgatgcaggtgcgtatatttctgaaactttacgtatcgacccatcttatgatcgttta
agcgcattagtagaaatctaccgtatgatgcgtcctggtgaaccgcctacaaaagaagcg
gctgaaggcttattcgaaaatatgttcttctcaccagatcgttatgacttatctgcagta
ggtcgcatgaaatttaaccgttctttagggatcgatgattctgaaggaagcggtgtatta
agcaaagacgatatcgttcgtgtaatgaaaaaactcattgcaatccgtaacggtaacggt
gaagtggatgatatcgaccacttaggtaaccgtcgtattcgttctgttggtgaaatggca
gaaaaccaattccgtattggtttagtacgtgttgaacgtgcagtgaaagaacgtttatct
ttaggtgatcttgattcattaactccacaagatcttatcaatgcgaaaccaatttctgct
gcggttaaagaattctttggttcttcacaactttcacaattcatggaccaaaataaccca
ctttcagaagtgacacacaaacgtcgtatttctgcattgggtccaggtggtttaactcgt
gaacgtgcaggtttcgaagttcgagacgttcacgcaactcactatggtcgtttatgtcca
atcgaaacccctgaaggtccaaacatcggtttgatcaactcactttctgtgtacgctcgt
acaaatgactacggtttcttagaaactccgtatcgtaaagtagtgaatggtcaagtaact
gaagaaatcgaatatttatctgctatcgaagaaggtaaatacgttatcgcacaggcgaac
tcaaacttagatgatgacttccgtttcactgatgctttcgtaacagcacgtggtgaaaaa
ggtgaatctggtttattccgccctgatgaagttcaatatatggacgtttcaactcaacaa
gttgtatctgtagcggcagcgttaattccgttcttggaacacgacgatgcgaaccgtgcc
ttgatgggtgcgaacatgcaacgccaagcagtacctactttacgtgcagacaaaccactt
gttggtactggtatggaaaaaccagtagcacttgactctggcgtagcggttacagcaaaa
cgtggcggtacaattcaatatgttgatgcatcacgtatcgtggtgaaagtaaacgaagat
gaaaccatcgcaggagaagcgggtattgatatttataacttaatcaaatatacccgttct
aaccaaaacacctgtattaaccaaattccttgtgtgaaattaggcgaacctgttggtcgt
ggcgaaatcttagcagatggtccatcaaccgacttaggtgaacttgcacttggtcaaaac
atgcgtgtagcgttcatgccatggaatggttataacttcgaagactcgatcttagtatct
gaacgtgttgttcaagaagatcgtttcacaacaatccacatccaagaattatcttgtgtg
gcgcgtgatactaaattaggcgctgaagaaattactgcggatattccaaacgtaagcgaa
gctgcattaagtaaacttgatgaatcaggtatcgtttacatcggtgcggaagtaaaaggt
ggtgatattcttgtgggtaaagtgacacctaaaggtgaaactcaattaaccccagaagaa
aaacttcttcgtgcaatcttcggtgaaaaagcatctgacgttaaagattcttctttacgt
gttccaaacagcgtgtctggtaccgtaattgacgttcaagtatttactcgcgatggcgtt
gaaaaagataaacgtgcacttgaaattgaagaaatgcaattaaaagaagcgaaaaaagac
ttaatggaagagttagaaattcttgaagctggtcttttcgcacgtgtgcgcaatctttta
gtatcaagcggtatggatgaagcaacccttgatcgaatgactcgtgaacaatggcttgat
caaagtctaagcgatgaagaaaaacaaactcaattagaacaacttgcggatcaatacgaa
gaattacgtaaagagttcgaacaaaaacttgaagtacaacgtggcaaaattatccaaggt
gatgatctagcaccaggtgtacttaaagtggttaaagtttatcttgctgttaaacgtcgt
atccaacctggggataaaatggcgggtcgtcacggtaacaaaggggttatctcaaaaatt
aacccaatcgaagacatgccatacgatgaaaacggtcaacctgttgatatcgtactaaac
ccactgggcgtaccttctcgtatgaatatcggtcagatcttagaaactcacttaggctta
gcggctaaaggtatcggtgataagatcaatgcgatgttaaaacaaaaacaaagcgtagaa
aaattgcgtgaatacatgcaaaaagcctacgaccttggcgaaggtgaacaaaaagttgat
cttaataccttcactgacgaagaagtaatgcgtttagcagaaaacctacgtaaaggttta
ccaatcgcaacaccagtattcgatggtgcggatgaaaaagaaatcaaaggtttattagaa
ttaggtgatcttccaacatcaggacaaattactttattcgatggtcgtaccggtgagaaa
tttgaacgtccagtaacagtaggttacatgtacatgctcaaattgaaccacttagttgat
gacaaaatgcacgctcgttcaaccggttcttacagccttgttacccaacaaccattgggt
ggtaaagcacagttcggtggacaacgtttcggggaaatggaagtttgggcacttgaagct
tatggtgcagcctataccctacaagaaatgttaaccgtgaaatctgatgacgtgaacggt
cgtacgaagatgtataaaaacatcgttgcgggcaaccaacaaatggacccaggtacaccg
gaatctttcaacgtaattatgaaagaaatccgttcattaggtatcaacatcgatcttgat
gaagagtaa
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integrated database retrieval system
