Actinobacillus delphinicola: NCTC12871_01129
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Entry
NCTC12871_01129 CDS
T06572
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
adp
Actinobacillus delphinicola
Brite
KEGG Orthology (KO) [BR:
adp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
adp03016
]
NCTC12871_01129 (rnb)
Enzymes [BR:
adp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12871_01129 (rnb)
Transfer RNA biogenesis [BR:
adp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC12871_01129 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
DUF2274
HSP9_HSP12
Motif
Other DBs
NCBI-ProteinID:
VEJ09652
UniProt:
A0A448TUH8
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All DBs
Position
1:complement(1190378..1192354)
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AA seq
658 aa
AA seq
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MFQDNPLLAQLKQKIHDAKPKVEGIVRATDKSYGFLECDKNSYFLPPPAMKKLVHGDKIR
AAIETIGDKEQAEPLELIEPMLTRFIAKVRFNKDNKLQVIVDHPQINQPIGAKQAKSLTE
SLQAGDWVVATLKTHPLRDDRFLFAEITQFICHEDDEFAPWWVTLAKHEQSRYPVEGQAE
YHMLDTQERLDLTDLHFVTIDSESTQDMDDALYIEPTLNENNQQVGWKMVVAIADPTAYI
AEDSDIESAARQRCFTNYLPGFNIPMLPRELADDLCSLTPNDTKAALVCTIQTDMHGNVI
EKPVFVSAYVQSKAKLAYDKVSDYLEKVADAWQPEDEKTLAQINYLFQFTKTRIEWRKQN
SLLFKENPDYSFELAENGKVLAIHASYRRIANQIVEEAMILANMCAAEYLNENIGCGIFN
THMGFDSKNLTAAKEFLLNQVTLEDKATRYTEETLSTLDGYRQMRQDIDDADSDYLELRL
RRYLTFAEFKPQLAPHFGLGLTGYATWTSPIRKYSDMVNHRLIKSFIQGKTDFTEPSENV
LQRLQEARRQNRLVERDIADWLYCRYLADKVEAKPQFDAKIQDISRGGMRVQLTENGASI
FVPASTITENKDDYQFNSDELALYIKGERRYKIGDIVNIQLSEVKEETRSLIGVLISE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatcctttacttgctcaattaaaacaaaaaatccatgatgcaaaaccc
aaagtggaaggtatcgtccgtgcaaccgataaatcgtatggctttttagaatgcgataaa
aatagctattttctcccgcctccggcaatgaaaaagttagtccatggcgataaaatccgt
gcggcaatcgaaacaattggagataaagagcaagcggaaccattagaattaatagaacca
atgcttactcgctttattgcgaaagtacgttttaataaagataataaattacaagtcatt
gttgatcatccgcaaattaatcaacctattggtgccaaacaagcaaaatccctcactgaa
tcattacaagcaggtgactgggttgttgctacactaaaaacacatccattacgtgatgac
cgctttctctttgcagaaattacgcaatttatttgtcatgaagatgatgaatttgcacct
tggtgggtaacactagcaaaacatgaacaatctcgttaccctgtcgaaggtcaagcagaa
tatcacatgttagatacacaagaacgccttgatttaactgatttacattttgtaaccatc
gatagcgaaagcactcaagacatggatgatgccctgtatatcgaaccaacactaaatgaa
aataatcaacaagttggttggaaaatggttgtagctatcgcagatccgaccgcttatatt
gcagaagatagcgatattgaatcggcggcaagacagcgttgcttcacaaactatttacca
ggatttaatatcccaatgttgccacgtgaacttgctgatgatctttgttcccttacccca
aatgatactaaagcagcccttgtttgtaccatccaaacagatatgcatggtaacgtcatt
gaaaaacctgttttcgtatcagcttatgtgcaatcaaaagcgaaattagcctacgataaa
gtttctgattatcttgaaaaagtagcagatgcgtggcaaccagaagatgaaaaaacatta
gcgcaaattaattacttattccaatttactaagacacgtatcgagtggcgtaaacaaaat
tctttattatttaaagaaaatcctgattactcttttgaacttgctgaaaatggtaaagtc
cttgctattcatgcaagttatcgtcgcattgcaaatcaaatcgtagaagaagccatgatt
cttgccaatatgtgtgccgctgaatacctaaatgaaaatatcgggtgtggtattttcaac
actcacatgggatttgatagtaaaaatcttaccgcagctaaagagtttctactcaatcaa
gtcacattagaagataaagcaacacgttatacagaagaaacattatctactttagatgga
tatcgccaaatgcgtcaagatattgatgatgcagacagtgactatttagaattacgctta
cgtcgttacctcacttttgctgagtttaaaccgcaacttgctccgcattttggattgggt
ctaacaggttatgcaacttggacgtcaccgattcgtaaatatagcgatatggtaaaccat
cgtctaattaaatctttcattcaaggcaaaacagattttaccgaaccttctgagaatgta
ctgcaacgcttacaagaggctcgtcgtcaaaatcgtttggttgaacgtgatatcgcagat
tggttgtattgtcgttatctcgcagataaagttgaagcaaaaccacaatttgatgctaaa
attcaagatatcagtcgtggtggaatgcgtgtacaattaactgaaaatggtgcaagtatt
ttcgtgccagcatcaacaattaccgaaaataaagatgattaccagtttaatagtgacgaa
ctggcactttatattaaaggtgaacgtcgctacaagattggagatatcgtaaatatccag
ctaagtgaagtaaaagaagaaacaagaagcttaattggggtattaatttccgaataa
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