Achromobacter denitrificans: APT56_00970
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Entry
APT56_00970 CDS
T04244
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
adt
Achromobacter denitrificans
Pathway
adt02020
Two-component system
adt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
APT56_00970
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
APT56_00970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adt03021
]
APT56_00970
Transcription machinery [BR:
adt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
APT56_00970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ALX81842
LinkDB
All DBs
Position
242720..244165
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AA seq
481 aa
AA seq
DB search
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLADNPLLERDDEP
SSVETQAESERESSVQDDEPAPERDAPVEEMPGSGGVYPDDDSSMPEAARPDTLREHLLG
QLVLTRAAPRDAALTALLIDELDENGYLGSPLEEILGWLPAEMEPDLDELRAALSLLQSF
DPPGIGARDMADCLLLQLRNPDPARLPEAADPKVLACARQVCAQHLALLATGNTAKLCAA
TGCDEATLRAAHSLILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQ
INGLYAQMLGNQKESAHAGLQSQLQQAKWMIRNVEQRFDTILRVAQAIVDRQTAFFSQGP
AAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELKRFFGTGVSTDGGDATSATA
VQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgtacctatgacccgtcctattttagaactgcggcccggtcagcatctg
acgctgacccctcaactgcagcaatccatccggttgctgcagctgtccacgctcgagctc
gaggcggaaatctcgcaagtgctcgcggacaatccgttgctggaacgcgacgatgaaccc
tcctcggtcgagacccaggccgaatccgagcgtgaatcatcggtgcaggacgacgaaccc
gcgcccgaacgcgacgcgccggtggaggagatgccggggtcgggcggcgtctatcccgat
gacgattccagcatgcccgaggcggcccggcccgataccctgcgcgaacacctgctgggc
cagctggtgctgacgcgcgcggcgccgcgcgatgccgcgctgaccgcgctgctgatcgac
gaattggacgagaacggctatctgggctcgccgctggaggaaatcctgggctggctgccg
gccgagatggagccggacctggatgagctgcgcgcggccttgtcgctgttgcagtcgttc
gacccgccgggcatcggcgcgcgcgacatggccgactgcctgctgttgcaactgcgcaac
cccgacccggcgcggctgccggaggccgccgacccgaaggtgctggcctgtgctcgtcag
gtctgcgcccagcatcttgcgctgctggccacgggcaacaccgccaagctgtgcgcggcc
acgggttgtgacgaggccacgctgcgcgccgcccattccctgatcctgcgcctggagccg
cgtccgggccgcgcctggacggtgccggcggcggactacgccgtgcccgacgtcatcgtg
cgcaagacgcgccgcggttggcaggtgacgctcaacagcgcggccgtgccgcggctgcag
atcaacgggctgtacgcgcagatgctgggcaaccagaaggagtccgcccacgccggcctg
cagtcgcagttgcagcaggccaagtggatgatccgcaacgtcgagcagcgcttcgacacc
atcctgcgcgtggcccaggccatcgtcgatcgccagaccgccttcttcagccaggggccg
gcggccatgcggccgctcatcctgaaggacatcgcgggcgaactgggcctgcacgagtcc
acgatttcacgtgccacgacacagaagtacatgctcactccgtttggcacgttggaactc
aagcgcttcttcgggacaggggtgtcgaccgatggcggcgacgccacctcggccacggcg
gtgcagactttcatccgccagatggtggccgaggagaaccgcgccaagccattgtcggac
agccagatcatggaaaaactggccgaccagggcatcgtcatcgcccgccgcaccgtggcc
aaataccgcgaggcgctgcggattgcgccagcggcattgcgcaaggcgcaggctgccgcg
cgatga
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