Achromobacter denitrificans: APT56_01010
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Entry
APT56_01010 CDS
T04244
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
adt
Achromobacter denitrificans
Pathway
adt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT56_01010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adt03019
]
APT56_01010
Enzymes [BR:
adt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APT56_01010
Messenger RNA biogenesis [BR:
adt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APT56_01010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
SNF2-rel_dom
AAA_22
P-loop_SecA
DUF8086
Motif
Other DBs
NCBI-ProteinID:
ALX81850
LinkDB
All DBs
Position
complement(250586..252100)
Genome browser
AA seq
504 aa
AA seq
DB search
MTTSSSFADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFT
LPILHLLMQRKPEARKAGRPRCLILTPTRELTAQVAESVQTYGKHTSLTSMVMFGGVNIN
PQISALRKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILAL
LPKQRQNLLFSATFSDEIRSLARGVLNNPGEVSVTPRNTATELVTQTVHLVEQHHKRDLI
SHIIRESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDGTV
TVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKL
LKDIERLIKKTIERKPVADWTPPATSAAAFERQERDEDSRQPRGGGGRNGGRGGNAGAPR
SRPANAAPRNANGGRAPAPARAGGDNRGGQGQRDGKPSDRPAHAGRGDARPQQNHRRPEG
SARPAGSGNGGRPAGGPRAALLSK
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
ttgactacctcttcctctttcgccgacctcgggctggccgattccctgttgcgcgccatt
gccgataccggctacaccgcgcccacccccatccaggcccaggcgattccgcaggtcctc
aagggcggcgacctgctggccgccgcccagaccggcaccggcaagaccgccggcttcacg
ctgcccatccttcatctgctgatgcagcgcaagccggaagcccgcaaggccggccgcccg
cgctgcctgatcctgacgccgacgcgcgaactgaccgcgcaggtggccgaatcggtgcag
acctacggcaagcacacctcgctgacgtccatggtgatgttcggcggcgtcaacatcaac
ccccagatctccgccctgcgcaagccgctggacatcctggtggccactcccggccgcctg
ctggaccactgcggccagaagacggtcgacctgtccggcgtcgagatcctggtgctggac
gaagccgaccgcatgctggacatgggcttcatccgcgacatccgcaagatcctggccctg
ctgcccaagcagcgccagaacctgctgttctcggccaccttctcggatgagatccgttcg
ctggcgcgcggcgtgctgaacaacccgggcgaagtctcggtcaccccgcgcaacaccgcc
accgaactggtcacccagacggtgcacctggtcgaacagcaccacaagcgcgacctcatc
agccacatcatccgcgaaagcggctggcaccaggtgctggtgttcacgcgcaccaagcac
ggcgccaaccgcctggccgaaaagctggtcaaggacggcctgaccgccgccgcgatccac
ggcaacaagagccagtcggcccgcacccgcgcgctggccggcttcaaggacggcaccgtg
acggtgctggtggccaccgacatcgccgcccgcggcctggacatcgaccagttgccccag
gtggtgaacttcgaactgcccaacgtgccggaagactacgtgcaccgcatcggccgcacc
ggccgcgccggcgccaccggcgccgcggtctcgctggtggacaacagcgaaatcaagctg
ctcaaggacatcgagcgcctgatcaagaagaccatcgagcgcaagccggtggccgactgg
accccgcccgccaccagcgccgccgccttcgaacgccaggaacgcgacgaagactcgcgc
cagccgcgtggcggcggcggccgtaacggcggccgcggcggcaacgccggcgcgccccgt
tcgcgcccggccaacgccgcgccgcgcaacgccaacggcggccgcgccccggcgccggcc
cgtgccggcggcgacaaccgcggcggccagggccagcgcgacggcaagccgtccgaccgt
ccggcccacgccggccggggcgacgcccgcccgcagcagaaccaccgccgccccgaaggc
agcgcccgtcccgccggcagcggcaacggcggccgcccggccggcggcccgcgcgcggcg
ctgctctccaagtaa
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