Achromobacter denitrificans: APT56_03270
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Entry
APT56_03270 CDS
T04244
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
adt
Achromobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
adt03016
]
APT56_03270
Enzymes [BR:
adt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
APT56_03270
Transfer RNA biogenesis [BR:
adt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
APT56_03270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF7691
RNase_P-MRP_p29
Motif
Other DBs
NCBI-ProteinID:
ALX82274
LinkDB
All DBs
Position
complement(745551..747458)
Genome browser
AA seq
635 aa
AA seq
DB search
MYVFYEDDGSFKAGHILSETDASLQVESESGKRSKIKRANTLFNFAAPEPAALMAQAAAL
AETLDLQFLWECAPQEEFDSPALAADYFGHAPTPVEQAALLMRLHGAPAYFHRRGKGSYR
PAPPDILAAALAALEKKQRQAEQQQEWVDEMAAGRLPEPIAQVAESLLIRPDKNSQQWKA
LDAACARLGKSPDRLLLELGAWPHALALHKRRFLAVNFPRGLAFPELELPPIDRDLPLSD
AEIYSVDDVTTTEIDDALSVSTLPDGNLRVGIHVAAPGLTVTRDSEFDKLARARLSTVYM
PGDKIPMQPDNVIKAFSLDAGREVPVLSLYVTANPETGEVIESDTRLERVVVRENLRHNM
LDAQVTEESLNDTSTDLPYGHWLRPLWKLAQALSAQRENVRGKPENNSRVEYSFYLDGDP
DDPDTPVRLVPRQRNAPLDRMVAEYMILANNLWGGLLNQHGVPGIYRSQQAGRVRMSTQA
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHGVSARLVAPFKPRDADLFAIIGAF
DAQYAAWAEFQSAMERYWCLRWLKQHNITRTVAHVLREDLVRFANCPLVTRIGGMPELER
GTAVEVEILGMDELSLELDCRYVGQVGPAAEEAAA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgttttacgaagacgacggcagcttcaaggccggccacatcctgtccgaaacc
gacgccagcctgcaggtggagtcggagtcgggcaagcgcagcaagatcaagcgcgccaac
acgctgttcaatttcgccgcgcccgaaccggccgcgctgatggcccaggcggcggcgctg
gccgaaaccctggatctgcaattcctgtgggaatgcgcgccccaggaagaattcgattcg
cccgcgctggcggccgactacttcggtcacgcccccaccccggtggaacaggccgcgctg
ctgatgcgcctgcacggcgcgcccgcctatttccaccgccgcggcaagggcagctaccgc
cccgccccgcccgacatcctggccgccgccctggccgcgctcgaaaagaaacagcgccag
gccgagcagcaacaggaatgggtggacgagatggccgccggccgcctgcccgagcccatc
gcccaggtggccgaatcgctgctgatcaggcccgacaagaattcgcagcaatggaaggcg
ctggacgccgcctgcgccaggctcggcaagagccccgaccgcctgctgctggaactgggc
gcctggccgcacgcgctggcgctgcacaagcgccgcttcctggcggtgaacttcccgcgc
ggcctggccttccccgagctggaactgccgccgatcgaccgtgacctgccgctgtcggat
gccgaaatctactcggtcgacgacgtcaccaccaccgaaatcgacgacgcgctgtcggtc
tctaccctgcccgacggcaacctgcgcgtgggcatccacgtggccgcgcccggcctgacc
gtgacgcgcgacagcgagttcgacaagctggcgcgcgcgcgcctgtcgaccgtctacatg
ccgggcgacaagatcccgatgcagcccgacaacgtcatcaaggcattctcgctggacgcc
ggccgcgaggtgccggtgctgtcgctgtacgtgacggccaatccggaaaccggcgaggtc
atcgaatccgacacgcgcctggagcgcgtggtggtgcgcgagaacctgcgccacaacatg
ctcgacgcccaggtcaccgaagagagcctgaacgacacttccactgacctgccctacggc
cactggctgcgcccgctgtggaagctggcgcaggcgctgtcggcgcagcgcgaaaacgtg
cgcggcaagcccgagaacaattcgcgggtggagtacagcttctacctggacggcgacccc
gacgatcccgacaccccggtgcgcctggtgccgcgccagcgcaacgcgccgctggaccgg
atggtggccgagtacatgatcctggccaacaatctgtggggcggcctgctgaaccagcac
ggcgtgcccggcatctaccgctcgcaacaggccggccgcgtgcgcatgagcacgcaggcg
ctgccgcacgaggccatcggcgtgccgcagtacgcctggagcacgtcgccgctgcgccgc
tacgtcgacctggtgaaccagtggcagttgatcgccgcggtcgagcacggcgtctcggcg
cgcctggtggctcccttcaagccgcgcgacgcggacctgttcgcgatcatcggcgcgttc
gacgcgcagtacgcggcctgggccgagttccagagcgcgatggagcgctactggtgcctg
cgctggctcaagcagcacaacatcacccgcacggtggcccacgtgctgcgcgaagacctg
gtgcgcttcgccaactgcccgctcgtgacccgcatcggggggatgcccgagctggagcgc
gggacggcggtggaggtggagatcctgggaatggatgagttgtcgctggagctggattgc
cggtatgtggggcaggtggggccggcggctgaagaggctgctgcctga
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