Achromobacter denitrificans: APT56_05255
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Entry
APT56_05255 CDS
T04244
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
adt
Achromobacter denitrificans
Pathway
adt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT56_05255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adt03019
]
APT56_05255
03400 DNA repair and recombination proteins [BR:
adt03400
]
APT56_05255
Enzymes [BR:
adt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APT56_05255
Messenger RNA biogenesis [BR:
adt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APT56_05255
DNA repair and recombination proteins [BR:
adt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
APT56_05255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ALX82625
LinkDB
All DBs
Position
complement(1179542..1181371)
Genome browser
AA seq
609 aa
AA seq
DB search
MSDTRALGVLQRVFGYESFRGDQQAIVQQVIDGGDALVLMPTGGGKSLCYQIPSLVREGT
GIVVSPLIALMQDQVDALTELGVRAAFLNSTQEWRVARDVEQAFLAGELDLLYVAPERLL
TDRCLQLLERGNIALFAIDEAHCVSQWGHDFRPEYLGLSMLHERWPDVPRIALTATATAE
TRTEIAQRLSLTDAHHFVSSFDRPNIRYRIVEKNEVRKQLLDMIRTEHEGESGVVYALSR
ARVEETAEFLCNQGIDAMPYHAGLSPQVRAANQARFLREDGVVMVATIAFGMGIDKPDVR
FVAHIDLPKSVEGYYQETGRAGRDGLPATAWLAYGLQDVVQQRRMIDESPGDDAYRRRLG
QQLDAMLGLCETVECRRVRLLAYFGQHITACGNCDVCLDPPQAWDGTVAAQKVLSAVYRL
WKERGQRYGAGHIIDILRGKVTDRTKQHGHETLSVFGVGEDLSDTAWRGVLRQLLAQGLL
TVDNEGYGTLALTEGSRAVLKGERQLMLRRESEKKARSGKTGGSRAKAAAIDLPAELQPV
FEALRAWRGEVAKSHGVPAYVIFHDATLREIALAQPDSMDALSHISGVGARKLEAYGEEI
LQRVARPVL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacacgcgcgccctcggagtcctgcagcgcgttttcggttacgaatccttccgc
ggcgaccagcaagccatcgtccagcaagtcatcgacggcggcgacgcgctggtcctgatg
cccaccggcggcggcaagtcgctctgctaccagatcccgtccctggtgcgcgaaggcacc
ggcatcgtcgtctcgcccctgatcgcgctgatgcaggaccaggtcgacgcgctgaccgaa
ctgggcgtgcgcgccgcgttcctgaattcgacccaggaatggcgcgtggcccgcgacgtc
gaacaggctttcctggccggcgagctggacctgctgtacgtggcgcccgaacgcctgctg
accgaccgctgcctgcaactgctggaacgcggcaacatcgccctgttcgccatcgacgag
gcccactgcgtgtcgcaatggggccacgatttccggccggagtacctgggcctgtcgatg
ctgcacgagcgctggccggacgtgccgcgcatcgcgctcaccgccaccgccaccgccgag
acccgcaccgagatcgcccagcgcctgtcgctgaccgacgcgcaccacttcgtctccagc
ttcgaccgccccaacatccgctaccgcatcgtcgagaagaacgaggtgcgcaagcagttg
ctggacatgatccgcaccgagcacgaaggcgagtccggcgtggtctacgccctgtcgcgg
gcgcgggtcgaggagaccgccgaattcctctgcaaccagggcatcgacgccatgccctat
cacgccgggctcagcccccaggtgcgcgccgccaaccaggcgcgcttcctgcgcgaggac
ggcgtggtcatggtcgccaccatcgccttcggcatgggcatcgacaagcccgacgtgcgc
ttcgtggcgcacatcgacctgcccaagtcggtcgagggctactaccaggaaaccggccgc
gccggccgcgacggcctgcccgccaccgcctggctggcctacggcctgcaggacgtggtg
cagcagcgccgcatgatcgacgaatcccccggcgacgacgcctaccgccgccgccttggc
cagcaactggacgccatgctgggcctgtgcgaaaccgtggaatgccgccgcgtgcggctg
ctggcgtacttcggccagcacatcacggcctgcggcaactgcgacgtctgcctcgacccg
ccgcaggcctgggacggcacggtggcggcgcagaaggtgctgtccgccgtgtaccggctg
tggaaggaacgcggccagcgctacggcgccggccacatcattgacatcctgcgcggcaag
gtcaccgaccgcaccaagcagcacggccacgaaacgctcagcgtgttcggcgtgggcgaa
gacctcagcgataccgcctggcgcggcgtgctgcgccagttgctggcgcagggcctgctg
accgtcgacaacgaaggctacggcacgctggccctgaccgaaggcagccgcgccgtgctc
aagggcgagcgccaactgatgctgcggcgcgaatccgagaagaaagcccgctccggcaag
accggcggcagccgcgccaaggccgccgcgatcgacctgcccgccgaactgcaaccggtg
ttcgaggcgctgcgcgcctggcgcggcgaagtggccaagagccacggcgtgccggcctac
gtcatcttccacgacgccacgctgcgcgaaattgcgctggcccagcccgactcgatggac
gcgctcagccacatcagcggcgtcggcgcgcgcaagctggaagcctacggcgaggaaatc
ctgcagcgggtggcgcggccggtgctgtaa
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