Achromobacter denitrificans: APT56_05905
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Entry
APT56_05905 CDS
T04244
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
adt
Achromobacter denitrificans
Pathway
adt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT56_05905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adt03019
]
APT56_05905
03016 Transfer RNA biogenesis [BR:
adt03016
]
APT56_05905
Enzymes [BR:
adt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
APT56_05905
Messenger RNA biogenesis [BR:
adt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
APT56_05905
Transfer RNA biogenesis [BR:
adt03016
]
Prokaryotic type
tRNA degradation factors
APT56_05905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_KhpA-B
KH_SLS1_2
KH_PNO1_2nd
DUF5813
Motif
Other DBs
NCBI-ProteinID:
ALX82743
LinkDB
All DBs
Position
1313482..1315638
Genome browser
AA seq
718 aa
AA seq
DB search
MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV
NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA
GTENAVLMVESEADQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQPPAKDE
ALIAAVTSAAQEGLNAAYQIREKQARTTKLREVYADVSAKLNAAAAEKGEPAPDAVTVDN
ILFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT
LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALIPLL
PAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKF
AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILG
KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI
VIASVDEAQAKEAQRRIVELTADVEVGQVYEGSVLRLLDFGAIVQVLPGRDGLLHISEIA
NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAIGGIEQQQPAAEAAPQAEPQAE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaagtgactaaatcgttccagtacggccagcatacggtcgtcctggaaacc
ggcgaaattgctcgccaggcctccggcgccgtggtggtgtcgatcgaggacaccgtcgtc
ctggccactgtcgtggcctccaagaaggccaagccgggccagacgttcttcccgctgacc
gtcgactacatcgaaaagacctacgccgccggccgcatccccggtggtttcttcaagcgc
gaaggcaagccgtccgagaaggaaacgctgacctcgcgcctgatcgaccgtcccctgcgt
ccgctgttccccgaagacttctacaacgaagtccaggtggtcatccacacgctgtcggtc
aatcctgaaatcgaccccgacatccccgcgatgatcggcgcctcggccgcgctggccatc
tccggcatccccttcaatggcccgatcggcgccgcccgcgtgggctacatcgatggccag
tacgccatcaacccgaccgcgtcgcagctgaagtcctcgaagctcgacctggtggtcgcc
ggcaccgaaaacgccgtgctgatggtggaatcggaagctgaccagctgtccgaggaaatc
atgctgggcggcgtggtctacggccacgagcagatgcaggccgtcatcaacgccatccac
gaactggtcaaggacgccggcaagcccgattgggactggcagccgcccgccaaggacgag
gccctgatcgccgccgtcacgtcggccgcccaggaaggcctgaacgccgcctaccagatc
cgcgaaaagcaggcccgcaccaccaagctgcgtgaagtctacgccgacgtgtcggccaag
ctgaacgccgccgccgccgagaagggcgagccggcgccggacgccgtcaccgtcgacaac
atcctgttctcgctggaatcggccatcgtccgtggccagatcctgaacggcgaaccgcgt
atcgacggtcgcgacacccgcaccgtgcgtcccatcagcgtgcgcctgggcgtgctgccg
cgcgcgcacggcagcgccctgttcacccgtggtgaaacccaggcactggtcgtggccacg
ctgggcaccaagcaggacgagcagatcatcgacgcgctcatgggcgagtaccgcgatcgc
ttcatgctgcactacaacatgcctccgttcgccaccggcgaaaccggtcgcatcggtgtg
cccaagcgccgcgaaatcggccacggccgcctggccaagcgcgcgctgatcccgctgctg
ccggccccggaagacttccagtacaccatccgcatcgtgtcggaaatcaccgagtccaac
ggctcgtcgtcgatggcttcggtctgcggcggctcgctggccatgatggacgccggcgtg
ccggtcaaggatcacgtggccggcgtggccatgggcctgatcctggacggcggcaagttc
gccgtgctgaccgacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtc
gcgggcaccgaaaacggcgtcaccgcgctgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaagtggcgctggcgcaagcccgcgaaggccgcctgcacatcctgggc
aagatgaaggaagcgctggacggttcgcgcggcgagctgtcggctttcgccccgcgcatg
ctgaccatcaagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgccacc
atccgcgcgctgaccgaggaaaccggcacccagatcgacatctccgacgacggcacgatc
gtgatcgccagcgtcgacgaagcgcaggccaaggaagcccagcgccgcatcgtcgagctg
accgccgacgtcgaagtgggccaggtctacgagggctcggtgctgcgcctgctggacttc
ggcgccatcgtgcaagtgctgccgggccgcgacggcctgctgcacatctcggaaatcgcc
aactaccgcatcgccaacatcaacgatgtgctgaaggtcggccagcaagtccgcgtcaag
gtcatcgaggccgacgacaagggccgcctgcgcctgtccatcaaggccatcggtggcatc
gagcagcagcagcccgccgctgaagccgccccgcaagcggaaccgcaagccgagtaa
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