KEGG   Achromobacter denitrificans: APT56_06105
Entry
APT56_06105       CDS       T04244                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
adt  Achromobacter denitrificans
Pathway
adt02020  Two-component system
Brite
KEGG Orthology (KO) [BR:adt00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    APT56_06105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:adt03021]
    APT56_06105
Transcription machinery [BR:adt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     APT56_06105
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 PhyR_sigma-like HTH_28 HTH_24 HTH_20 HTH_11 HTH_38 HTH_7 HTH_36 HTH_40 Sigma70_r3 RRG8 HTH_31 TnsD
Other DBs
NCBI-ProteinID: ALX82775
LinkDB
Position
1357597..1358124
AA seq 175 aa
MSSMESLEHRELGRLYRDHHGWLRGWLLRRLNVPAEAADLAQDTFLRLLASPASMAQLQG
VRQPRSFLATVAQRTLVDHIRRQVLERAWLETLARQPEASAISPETQAILLETIREIDAM
LHGLGDKVRRAFLMSQLEGASYAEIAARLGVTVSSIKKYMARATEHCLVYALARQ
NT seq 528 nt   +upstreamnt  +downstreamnt
atgtcgtccatggaatccctggagcaccgcgagctcggcaggctgtatcgcgaccaccac
ggctggctgcgcggctggctgctgcggcgcctgaacgtcccggccgaggcggccgacctg
gcccaggacacgttcctgcggctgctggcgtcgccggcgtcgatggcgcaactgcagggc
gtgcggcagccgcgcagcttcctggcgacggtggcgcagcgcacgctggtcgaccacatc
cgccgccaggtgctggagcgcgcctggctcgaaacgctggcgcggcagcccgaggccagc
gccatttcgccggagacgcaggccatcctgctcgagaccatccgcgagatcgacgccatg
ctgcacggcctgggcgacaaggtgcggcgcgccttcctgatgtcccagctggaaggggcc
agctacgccgagatcgctgcccgcctgggcgtgacggtcagttccatcaagaaatacatg
gcgcgcgccaccgagcattgcctggtgtacgcgctggccaggcagtag

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