Achromobacter denitrificans: APT56_07960
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Entry
APT56_07960 CDS
T04244
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
adt
Achromobacter denitrificans
Pathway
adt03030
DNA replication
adt03410
Base excision repair
adt03420
Nucleotide excision repair
adt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APT56_07960
03410 Base excision repair
APT56_07960
03420 Nucleotide excision repair
APT56_07960
03440 Homologous recombination
APT56_07960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adt03032
]
APT56_07960
03400 DNA repair and recombination proteins [BR:
adt03400
]
APT56_07960
Enzymes [BR:
adt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
APT56_07960
DNA replication proteins [BR:
adt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
APT56_07960
DNA repair and recombination proteins [BR:
adt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
APT56_07960
NER (nucleotide excision repair)
GGR (global genome repair) factors
APT56_07960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
ALX83108
LinkDB
All DBs
Position
1794220..1796937
Genome browser
AA seq
905 aa
AA seq
DB search
MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDYKAEYAACIFDA
RGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLACR
AAERGVHTVVSTGDKDLAQLVNSHVTLVNTMSGEVLDEAGVVNKFGVAPDRIVDYLMLVG
DTVDNVPGVTKVGPKTAAKWISEFGSIDKLVEGAEGIKGVAGSNLREAIPNFPLTRQLLT
VKCDCDLTGYVDSVDDLTPRDRDDATLTELYERYGFRTWLRDLTGDAARVPTGDARVAAE
VPAAPTELDYRIIDDWAAFDAWMELVDKAPLVALDTETTSLDEMQAKLVGLSMAVAPGVA
CYIPVAHRGPDGATQLPKAEVLERLRPWLQDASRAKLLHHAKYDTHVFANEGVRLAGIAE
DTMLQAYVLESHRGVGLNDLAQRYLGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHYAAED
ADFTLQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHKLGQE
MLQLEQKAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLSKLAQDYP
LPQVLLEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQAAVITGRLASSDPNLQNIPVR
TEAGRRVREAFIAEQGMLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFG
VALADVSSEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARYPGVAMYME
NTRRVAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQGTAADLIKMAMVAV
QDWLEAEKLQTRMIMQVHDELVLEAPDAELELVRKTLPQLMCNVAELRVPLVAEVGVGKN
WEQAH
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaccttattgctggtcgacggttcaagctacttgtaccgcgctttccacgct
atgcctgatttgcgcaacgcgcaaggcgaacctacgggtgcgctgtacggcgtggtgaat
atgttgcgcaagcttgtatccgactataaggcagagtatgccgcatgtattttcgatgcg
cgcggcaagaccttccgggacgacctgtatccggaatacaagtcgcaccgcccgcccatg
ccggaagacctggcggcccagatcgaacccattcaccgcgccgtgcgggcgctgggctgg
ccggtgctggccatcgaaggcgtcgaggccgatgacgtgatcggcacgctggcctgccgc
gccgccgaacgcggcgtgcacacggtggtgtccaccggcgacaaggacctggcgcaactg
gtcaacagccacgtcacgctggtcaacaccatgagcggcgaggtgctggacgaggcgggc
gtggtcaacaagttcggcgtggcgccggaccgcatcgtcgactacctgatgctggtgggc
gataccgtcgacaatgtgccgggcgtgaccaaggtcggccccaagacggccgccaagtgg
atctccgaattcggttcgatcgacaaactggtcgagggcgccgagggcatcaagggcgtg
gccggcagcaacctgcgcgaagccattcccaatttcccgctgacgcgccagctgttgacg
gtcaagtgcgattgcgacctgaccgggtacgtcgacagcgtcgacgacctgacgccgcgc
gatcgcgacgacgccaccctgacagaactctacgaacgctacggtttccgtacctggctg
cgtgacctgaccggcgacgccgcgcgcgtgccgacgggcgacgcccgcgtggcggccgaa
gtgccagccgcgccgacggaactggattaccgcatcattgacgactgggctgcattcgac
gcctggatggaattggtggacaaggcgcccctggtggcgctggataccgagaccacttcg
ctggacgagatgcaggccaaattggtcggcctgtcgatggcggtggcgccgggcgtggcc
tgctacattccggtggcgcatcgcggccccgacggcgcgacgcaattgcccaaggccgag
gtgctggaacgcctgcgtccgtggctgcaggatgcctcgcgcgccaagctgctgcatcac
gccaagtacgacacgcatgtgttcgccaacgaaggcgtccgcctggccggcattgccgaa
gacaccatgctgcaggcctatgtgctggagtcgcatcgcggcgtcggcctgaacgacctg
gcgcagcgctacctgggccgcagcggtgtctcgtacgaggacctgtgcggcaagggcgcc
aagcagatcggctttgatgaagtggcggtggacaaggccggccactacgccgccgaagac
gccgatttcaccttgcaattgcatcaggtgctgcgtccgcaggtggcggccgacgccgga
ctggaacgcatctacctgctggaaatgcaggtgtccgcggtgctgaccacgatcgagcgc
aatggcgtcaaggtcgatgccgccgaactgggccgccagagccacaagctcggccaggaa
atgctgcagcttgagcagaaagcctacgaactggccggccagcccttcaatctgaattcg
cccaagcaattgggcgagatcctgttcggccgcatgcaactgccggtggtgcgcaagacc
gccggcggcgcgccgtcgaccgacgaggaagtgctgagcaagctggcgcaggactatccg
ctgccgcaggtgctgctggagtaccgcggactgtccaagctcaagtccacctacacggac
aagctgccgcgcatgatcaaccccgataccggccgcgtgcacacgcattattcgcaggcc
gcggtgatcaccggccggctggcttcgtccgatcccaacctgcagaacatcccggtgcgc
accgaggccggacgtcgcgtgcgcgaggccttcattgccgagcagggcatgctgctgtca
gccgactattcgcagatcgagctgcgcatcatggcgcacgtgtcggatgacgccaacctg
cagcgcgccttcgcggccggcgaggacatccatcgcgccacggcgtcggaagtgttcggc
gtggcgctggcggacgtgtcgtccgagcagcggcgcgcggccaaggcgatcaacttcggc
ctgatctacggcatgggtgtgtttggcctggcgtccaacctgggtatcacgcgcgacgcg
gcgcaggcttacatcgaccgttacttcgcccgctatcccggcgtggcgatgtatatggag
aacacgcgccgcgtggcgcgcgaacagggctacgtcgaaaccgtgttcggacgccggctg
cagttgccggaaatccgcggcgcatccgggccgcggcgccagggcgccgagcgcgcggcg
atcaatgcgccgatgcagggcaccgcggccgacctcatcaagatggcgatggtggcggta
caggactggctcgaagccgaaaaactgcagacccgcatgatcatgcaggtgcacgacgaa
ctggtgctggaagcgcccgatgccgaactcgaattggtcaggaagacgctgccgcaattg
atgtgcaacgtggccgagctgcgcgtgccgctggtggccgaagtgggcgtgggcaagaac
tgggagcaggcccactga
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