Achromobacter denitrificans: APT56_09045
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Entry
APT56_09045 CDS
T04244
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
adt
Achromobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adt03019
]
APT56_09045
Enzymes [BR:
adt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
APT56_09045
Messenger RNA biogenesis [BR:
adt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
APT56_09045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
NACHT
T2SSE
nSTAND3
SLFN-g3_helicase
AAA_25
ResIII
HA2_N
AAA_30
SRP54
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
ALX86834
LinkDB
All DBs
Position
2018456..2022271
Genome browser
AA seq
1271 aa
AA seq
DB search
MPAVTYPEDLPVSARRQEIARAIAGHQVVIVSGETGSGKTTQLPKICLELGRGRQKMIGH
TQPRRLAATSVAKRIAEELNTPMGEVVGYQVRFNDRTGPNASIKLMTDGILLAESQRDPL
LRRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAERFARHFAASEDK
PAPVIEVSGRLYPVEVRYRPVREEAEEEAAPAKAGRDRERMSGDEERDLIDAIVDAVDEC
ARHGPGDVLVFLPGEREIRESAEALRKRHPAGTEVLPLYARLSQAEQEQIFHPRGNARRI
VLATNVAETSLTVPGIRFVVDSGLARVKRYSWRNKVEQLRIEPVSRASANQRAGRCGRVG
PGLCIRLYDEADFNARAAFTDPEVLRSSLASVILRMKSLKLDDIEQFPFVEAPPGRAVAD
GYHLLQELGAIELAAADDGDDASRTGASFVLTRTGHELAKLPVDPRIGRMILAAREHQCL
AEMLIIASALSVQDARDRPMQEREAAEAAHAKFADDKSEFISFLKLWRWYGEQVQHKASQ
RKLVGLLRQNFLSPIRLREWHDVHSQLAALVGEQGWRVNQVEATYEQLHMALLSGLLGNI
GFKSDEGGHYQGAREIRFHIHPGSRLVKKAGRWIVAAELVETTRLYARCVARIDPVWLEK
VGAHLIRKNWSDPRWEKKAGQVVANERATLYGLTIYSGRRIQYGRVHPREARELFIRQAL
VPGEIDTRLAFVAHNRKLIAGIEKLEHQTRRPDILVDDELIYAFYDRQLPADISQTATLE
KWVNGLDKAEAARLLLTRDELMRHEAAGVTTDVFPKKVEWQGVSMALDYHFEPGSPRDGV
TLAVPLFALNQIDPARCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAAGFYDRWFE
RLGDPQTGLVDALIADMWDQVQVRPAAADFKLETLPAHLFMNFRVVDEHGRMLAAGRNLA
QLRAEFGKQAQATFQQLAASDTQVAQALAHENLTAWTFGPLPEIMEIKRRGQSVIGYPAL
VDRGAHCDLDVFDDPDEARKAHRAGLLKLFRLGLREQVKFLEKNLADLTKISMLYMTLGT
QEELRDQIIDCALGQACLAEPWPVNEQQFEARRAEGKGRLGLLAQEVARLAGAVLTEYAA
LQRKLPQAKPHAAAYADLQQQLGALMPKWFIRDTPYAQLSHFPRYLKAAVARIDKLRADP
GRDAKLVAEMAPLLTQYQRARSALKGAPDPRLDEFRWLLEELRVALFAQELRTPMPVSVK
RLMKSWESLQR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
attcccgccgtgacctaccccgaggacctgcccgtcagcgcgcggcgccaggaaatcgcg
cgcgccatcgccggccaccaggtggtcatcgtcagcggcgagaccggctcgggcaagacc
acccagttgcccaaaatctgcctggaactgggccgcggccgccagaagatgatcggccac
acccagccgcggcggctggccgccacctcggtggccaagcgcatcgccgaggagctgaac
acgccgatgggcgaggtggtgggctaccaggtgcgcttcaacgaccgcaccggccccaat
gcgtcgatcaagctgatgaccgacggcatcctgctggccgagtcgcagcgtgacccgctg
ctgcgccgctacgacaccatcatcatcgacgaggcgcacgaacgcagcctgaacatcgac
ttcctgctgggctatctgaagcagctgctgccgcgccgccccgacctgaaagtcatcatc
acctcggccaccatcgacgccgagcgcttcgcccgccatttcgccgcgtccgaggacaag
ccggcgccggtgatcgaggtctcgggccggctgtacccggtcgaggtgcgctaccgcccg
gtgcgcgaggaagccgaggaagaggccgcgccggccaaggcgggccgcgaccgcgagcgc
atgtcgggcgacgaggaacgcgacctaatcgacgccatcgtcgacgcggtcgacgagtgc
gcccgccacggccccggcgacgtactggtattcctgccgggcgagcgcgagatccgcgaa
tcggccgaggcgctgcgcaagcgccacccggccggcaccgaggtgctgccgctgtacgcg
cgcctgtcgcaggccgagcaggaacagatcttccatccgcgcggcaacgcgcgccgcatc
gtgctggccaccaacgtggcggaaacctcgctgacggtgcccggcatccgcttcgtggtc
gatagcggcctggcgcgcgtcaagcgctattcctggcgcaacaaggtcgagcagctgcgc
atcgagccggtcagccgcgcctcggccaatcagcgcgccggccgttgcggccgcgtcggc
ccgggcctttgcatccgcctctacgacgaggccgacttcaatgcccgcgccgccttcacc
gaccccgaggtgctgcgttcctcgctggcctccgtgatcctgcggatgaagtcgctcaag
ctggacgacatcgagcagttcccgttcgtcgaggccccgcccgggcgcgcggtggccgac
ggctaccacctgctgcaggagctgggcgcgatcgagctggccgcggccgacgacggcgac
gacgccagccgcaccggcgcctcgttcgtcctgacccgcaccggccacgaactggccaag
ctgccggtggacccgcgcatcggccgcatgatcctggccgcgcgcgagcaccagtgcctg
gcggaaatgctgatcatcgcctcggcgctgtcggtgcaggacgcgcgcgaccgccccatg
caggagcgcgaggcggccgaggccgcgcacgccaagttcgccgacgacaagtccgaattc
atttccttcctcaagctgtggcgctggtacggcgagcaggtgcagcacaaggcctcgcag
cgcaagctggtgggcctgctgcggcagaacttcctgtcgcccatccggctgcgcgaatgg
cacgacgtccactcccagctagccgccctggtgggcgagcagggctggcgcgtcaaccag
gtcgaggccacctacgagcagttgcacatggcgctgctgtcgggcctgttgggcaacatc
ggcttcaagagcgacgagggcggccattaccagggcgcccgcgagatccgcttccacatc
catccgggctcgcgcctggtgaagaaggccgggcgctggatcgtcgccgccgagctggtc
gagaccacccggctgtacgcgcgctgcgtcgcgcgcatcgacccggtctggctggaaaag
gtcggcgcccacctgatccgcaagaactggtccgacccgcgctgggaaaagaaggccggc
caggtggtggccaacgaacgcgccacgctctacggcctgaccatctacagcggccgccgc
atccagtacggccgggtccatccgcgcgaggcgcgcgagctgttcatccgccaggcgctg
gtgccgggcgagatcgacacgcgcctggccttcgtggcccacaaccgcaagctgatcgcc
ggcatcgaaaagctggaacaccagacccgccggccagacatcctggtcgacgacgagctg
atctacgccttctacgaccgccagctgccggccgacatctcgcagaccgcgacgcttgaa
aagtgggtcaatggcctcgacaaggccgaagccgccaggctgctgctgacgcgcgacgaa
ctgatgcggcacgaggccgccggcgtcaccaccgacgtcttccccaagaaggtggagtgg
cagggcgtgtcgatggcgctcgattaccacttcgagcctggctcgccgcgcgacggcgtg
acgctggcggtgccgctgttcgccctgaaccagatcgatccggcgcgctgcgaatggctg
gtgcccggcatgctcaaggagaaggtgcacctgctgctcaagtcgctgccgcagaagctg
cgccgccactgcgtgccgctgcccgactatgccgccggcttctacgaccgctggttcgag
cgcctgggcgacccgcagaccggcctggtggacgcgctgatcgccgacatgtgggatcag
gtgcaggtgcgcccggccgccgccgacttcaagctcgagacgctgccggcgcacctgttc
atgaacttccgcgtggtcgacgagcacggccgcatgctggccgccggccgcaacctggcg
cagctgcgcgccgagttcggcaagcaggcccaggccaccttccagcagctggccgccagc
gacacccaggtggcgcaggcgctggcgcacgagaacctgaccgcctggaccttcggtccg
ctgccggaaatcatggagatcaagcgccgcgggcaatcggtcatcggttacccggcgctg
gtcgatcgcggcgcgcattgcgacctggacgtgttcgacgacccggacgaggcgcgcaag
gcgcaccgcgccggcctgctcaagctgttccggctgggcctgcgcgagcaggtcaagttc
ctggaaaagaacctggccgacctgaccaaaatcagcatgctctacatgacgctgggcacg
caggaggaactgcgcgaccagatcatcgactgcgcgctcggccaggcctgcctggccgag
ccctggccggtcaatgaacagcagttcgaggcgcgccgggccgagggcaagggccggctg
ggcctgctggcccaggaagtggcgcgcctggcgggcgcggtgctgacggaatacgcggcc
ctgcaacgcaagctgccgcaggccaagccgcacgccgcggcctacgccgacctgcagcaa
cagctgggggcgctgatgcccaagtggttcatccgcgacaccccctacgcccagctgtcg
catttcccccgctacctgaaggcggcggtggcgcgcatcgacaagctgcgcgccgacccc
ggccgcgacgccaagctggtggccgagatggcgccgctcctgacccagtaccagcgggcc
cgctcggccctgaaaggggcgcccgacccccgcctggacgagttccgctggctgctggag
gaactgcgggtggccttgtttgcgcaggaattgcgcacgccgatgccggtgtcggtcaag
cgcctgatgaaaagctgggagtccctgcaacgctga
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