Achromobacter denitrificans: APT56_09065
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Entry
APT56_09065 CDS
T04244
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
adt
Achromobacter denitrificans
Pathway
adt03030
DNA replication
adt03430
Mismatch repair
adt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APT56_09065 (dnaE)
03430 Mismatch repair
APT56_09065 (dnaE)
03440 Homologous recombination
APT56_09065 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
adt03032
]
APT56_09065 (dnaE)
03400 DNA repair and recombination proteins [BR:
adt03400
]
APT56_09065 (dnaE)
Enzymes [BR:
adt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
APT56_09065 (dnaE)
DNA replication proteins [BR:
adt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
APT56_09065 (dnaE)
DNA repair and recombination proteins [BR:
adt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
APT56_09065 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
ALX83309
LinkDB
All DBs
Position
2026579..2030070
Genome browser
AA seq
1163 aa
AA seq
DB search
MSEAVTTPSPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK
GARGAGIKPIAGCDVWLSNDEDPAKPFRVLLLVRNHQGYLNLCELLSRAFLTNQGKGRAE
IRREWLQGQDGLIVLSGGRGGDVGQALDAGNAVSALALARQWAHLFPGSYYIELQRAGMD
GDEAYTQAAMRLAGEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEILANPRRVRRFTK
EQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPDGVSLDDYLVQL
SEEGLEKRMAFLFPDEAERESKREQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNG
VPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVI
DYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPMDPWTLER
TLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPG
QENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDFDVMALSLDDP
AAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNR
KHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEE
MAKHRELFEKGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAYHP
TEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRFEPVADKYTEKGKPPRT
MRYGLGAVKGTGQGAVEDILRARKEGGPFQNLFDFCRRVSKHAVNRRTIEALIKAGAFDT
IEPNRAAMLASVPTAMEAAEQAARSANQSSLFGDDSSDVVAGELAKVAPWDLHKKLTEEK
SALGYYYSGHLFDAWRDEVRQIVPMQLARVEPQRDLQWMCGVLASVRVMMTRRGKMVFAV
LDDGTAQVEISVFNELYEKHRNRLREDQLVIVQGKVSNDDYSGGMRIVAEQLYDLQLARE
ARAKSLRVKLNGGADAARLRQMLNPFRAEPENGIPGVPVDIVYTKNNFLCTVRLGEEWRV
RMADTLLENLNAWTKPNGVEVTY
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagccgtaacaaccccgtccccatttgtccacctgcgtgtccactccgagttc
tcggtggtggacggcatcgtgcgcatccccgacctcatcaagcgcgtggccaagctgggc
cagcccgcggtcgccctgaccgatctgtcgaacctgttcggcctgatcaagttctacaag
ggcgcgcgcggcgcgggcatcaagcccatcgccggctgcgacgtctggctgagcaacgac
gaagatcccgccaagccgttccgcgtgctgctgctggtgcgcaaccaccagggctacctg
aacctgtgcgaactgctgtcgcgcgcgttcctgaccaaccagggcaagggccgcgccgaa
atccgccgcgaatggctgcagggccaggacggcctgatcgtgctgtctggcggccgcggc
ggcgacgtcggccaggcgctggacgccggcaacgcagtgtcggcgctggcgctggcgcgc
cagtgggcgcacctgttcccgggcagctactacatcgaactgcaacgcgccggcatggat
ggcgatgaagcctacacccaggccgccatgcgcctggcaggcgaggccggcctgccggtg
gtggccacccacccggtgcagttcctggacgaatacgaattccaggcgcacgaggcccgt
gtctgcatcgccgaaggcgagatcctggccaatccgcgccgcgtgcgccgcttcaccaaa
gagcaatacctgctcagttccgaagaaatggcgcgccgcttcgccgacgtgccctcggcg
ctggccaacacggtcgagatcgccaagcgctgcaacctcagcctggtgctgggcaagccg
cgcctgccgaatttccccacgcccgacggcgtgtcgctggacgactacctggtgcagctg
tccgaagagggcctggaaaagcgcatggccttcctgttcccggacgaggccgaacgcgaa
tccaagcgcgagcagtactacgagcgtctgcgctgggaatgcaagaccatcatccagatg
ggcttcccgggctacttcctgatcgtgcaggacttcatcaactggggcaagaacaacggc
gtgccggtcggcccgggccggggttcgggcgccggttcgctggtggcgtacgcgctgggc
atcaccgaccttgacccgatccgctacgacttgctgttcgagcgcttcctgaaccccgag
cgggtctcgatgcccgacttcgatatcgacttctgccaggacaaccgcgaacgcgtcatc
gactacgtcaaggaaaagtacggccgcgccgccgtgagccagatcgccaccttcggcacg
ctgggcgccaaggccgtggtgcgcgacgccggccgggtgctggacatgccctacatgttc
tgcgacggcctgtccaagctgatcccgttcaacccgatggatccgtggacgctcgaacgc
accctgaaggacgagccggccttcaaggaccgctatgagcaggaagaggaagtgcgcgcg
ctggtcgacctggccaagccgctcgaaggcctgacccgcaacatcggcatgcacgccggc
ggcgtgctgatcgcgcccggcaagctcaccgacttctgcccgctgtattgccagccgggg
caggaaaacagcgccgtctcgcagttcgacaaggacgacgtcgaagccgccggcctggtc
aagttcgacttcctggggctgcgcaacctgaccatcctggactgggccgtgcgctacgtg
cgccagttcaacgaggacaagcgcgacttcgatgtcatggcgctcagcctcgacgatccg
gccgcctacaagatcctgtgcgacgccaacaccaccgccgtattccagctggaatcgcgc
ggcatgaaggaactgctcaagaagctgcggcccaacaccttcgaagacatcatcgccatg
ctggccctgtaccgtccggggccgctggaatcgggcatggtggacgacttcgtcaaccgc
aagcacggccgtgccgcggtggactacttccacaacgatctggagagcacgctcaagagc
acctacggggtcatcgtctaccaggaacaggtgatgctgatctcgcagatcatcggcggc
tactcgctgggcggcgccgacctgctgcgccgcgccatgggcaagaaaaagcccgaggaa
atggccaagcaccgcgagctgttcgagaagggcgccaaggaaaagggccacgatccggat
ctcgcggtcaagctgttcgacctgatggagaagttcgcgggctacggcttcaacaagtcg
cactcggccgcgtacgcgctgatctcgtaccagaccgcctggctcaaggcctaccacccg
accgagttcctggccgccaccatgtcctccgacatggacgacaccgacaaggtccagatc
ttctgccgtgacgcccaggacaacggcgtcgaggtgctgccgcccgacgtcaacttctcg
ggctaccgcttcgagccggtggccgacaagtacaccgaaaagggcaagccgccgcgcacc
atgcgctacggcctgggggcggtcaagggcaccggccagggcgcggtcgaggacatcctg
cgcgcccgcaaggaaggcggcccgttccagaacctgttcgacttctgccgccgcgtcagc
aagcacgcggtcaaccgccgcaccatcgaggccctgatcaaggccggcgcgttcgacacc
atcgagccgaaccgcgccgccatgctggcttcggtgccgaccgccatggaagcggccgag
caggccgcccgcagcgccaaccagtcctcgctgttcggcgacgacagcagcgacgtggtg
gccggcgagctggccaaggtggcgccgtgggacctgcacaagaagctcaccgaggaaaaa
tcggcgctgggctattactacagcggccacctgttcgacgcctggcgcgacgaagtgcgc
cagatcgtgccgatgcagctggcgcgggtcgagccgcagcgcgacctgcaatggatgtgc
ggggtgctggccagcgtgcgcgtcatgatgacgcgccggggcaagatggtgttcgcggtg
ctggacgacggcaccgcgcaggtcgagatctcggttttcaacgaactctacgaaaagcac
cgcaaccgcctgcgcgaagaccagctggtcatcgtccagggcaaggtcagcaacgatgac
tattcgggcggcatgcgcatcgtcgccgagcaactgtacgacctgcagctggcgcgcgag
gcgcgcgccaagtcgctgcgcgtcaagctcaacggcggcgccgacgccgcgcgtctgcga
cagatgctcaacccgttccgcgccgagcccgagaacggcatccccggcgtgccggtggac
atcgtctacaccaagaacaatttcctctgcacggtgcggctgggcgaggaatggcgcgtg
cgcatggccgacacgctgctcgagaacctgaacgcctggaccaagccgaatggcgtggag
gtcacgtactga
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