Achromobacter denitrificans: APT56_13240
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Entry
APT56_13240 CDS
T04244
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
adt
Achromobacter denitrificans
Pathway
adt02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
APT56_13240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adt03021
]
APT56_13240
Transcription machinery [BR:
adt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
APT56_13240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma-like
Sigma70_ECF
HTH_23
HTH_11
GerE
Motif
Other DBs
NCBI-ProteinID:
ALX84074
LinkDB
All DBs
Position
complement(2941568..2942083)
Genome browser
AA seq
171 aa
AA seq
DB search
MPPGDLPAPHAVDTLYRSHHAWLTAWLRRRLRDDHDAADLAQDTFVRLIAARDTPGLREP
RAFLARIAHGLMVNLWRRRDLEHAYLQALAQRPEACAPSPERRALVLEALVEIDAMLQRL
PARAREAFLLAQLGGYTYAEIGQRLDVSERMVKKYMAQVMLQCLLIADGVW
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcccggcgacctcccggctccccacgccgtcgacacgctctatcgctcgcaccac
gcctggctgacggcgtggctgcggcgtcgcctgcgcgacgaccacgacgccgccgatctg
gcccaggacaccttcgtgcgcctgatcgccgcccgcgacacgccaggcctgcgcgaaccg
cgcgccttcctcgcccgcatcgcccacggcctgatggtcaacctgtggcgccgccgcgat
ctcgaacacgcctatctgcaagccctggcccagcgccccgaggcctgcgcgccctcgccc
gagcggcgcgcgctggtgctggaggcgctggtcgagatcgacgccatgctgcagcgcctg
ccggcccgcgcccgcgaggctttcctgctggcgcaactgggcggctacacctatgccgag
atcggccagcgcctggacgtgtccgagcgcatggtgaagaaatacatggcgcaggtgatg
ctgcaatgcctgctgatcgcggacggcgtctggtga
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