Achromobacter denitrificans: APT56_17555
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Entry
APT56_17555 CDS
T04244
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
adt
Achromobacter denitrificans
Pathway
adt03410
Base excision repair
adt03430
Mismatch repair
adt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
APT56_17555
03430 Mismatch repair
APT56_17555
03440 Homologous recombination
APT56_17555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adt03400
]
APT56_17555
DNA repair and recombination proteins [BR:
adt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
APT56_17555
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
APT56_17555
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APT56_17555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ALX84849
LinkDB
All DBs
Position
3939714..3941414
Genome browser
AA seq
566 aa
AA seq
DB search
MVSPRLTVRRADLAACHALEASGIHPLLARLWAARGVTHPDQTKLAWPALLPPAGLTHSA
HAASVLADAIQAGKKLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSP
AVVELACRHRAGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPDALAIVN
PNQPGCGFPSKNLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVV
KLDANNRLLVTQGLQRMRSGRLQPGLRALFAVAGREPRAANGFDLGFALGPRINAAGRLA
DMSLGIACLTTDDEAQALEMARELDNINRERRTIEAEMREQAMAAMEAPDAAPGATVCVF
DPGWHQGVVGLVASRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLRDVLDLVSKRHPN
LIRKFGGHAMAAGLTLGRQDFPAFAPAFDAAVRELTGRDSFEPVIETDGSLESGYANAEV
AGLLQQQVWGAGFAAPLFLDEFVVRNQRLVGEKHLKLSLERGQQRFDAIWFGHDQSLPER
IQAAYRLEQNVWNGMVSVQLVIEHAG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
gtggtctcaccccgcttaaccgtccgccgcgccgacctcgccgcctgccacgccctggaa
gcctcgggcatccacccgctgctggcgcgcctgtgggccgcgcgcggcgtcacccatccc
gaccagaccaagctggcctggcccgcgctgctgccgcctgccggcctgacgcattcggcg
cacgccgccagcgtgctggccgacgccatccaggccggcaagaaactgctgatcgtggcc
gactacgactgcgacggcgccaccgcctgcgccgtcggcctgcgcgccctgtcggccatg
ggcgccgacgtcgacttcctggtgccgaaccgcttcgagaccggctacggcctgtcgccc
gccgtggtcgagctggcctgccgccatcgcgccggcaagcccgacatcatcatcaccgtg
gacaacggcatcgccagcgtcgacggcgtggccgcggccaacgccgccggcatcggcgtg
gtgatcaccgaccaccacctgcccggcgacacgctgccggacgccctggctatcgtcaac
ccgaaccaaccgggctgcggcttcccgtccaagaacctggccggcgtcggcgtcatcttc
tacatgatgctggcgctgcgcgcggagctgcgccgccgcggcgtctacgcccccgatggc
gggccgcgcctggacgcgctgtccgacctggtggcgctgggcaccgtggccgacgtggtc
aagctcgatgccaacaaccgcctgttggtgacgcaggggctgcagcgcatgcgcagcggc
cgcctgcagcccggcctgcgcgccctgttcgccgtggcgggccgcgagccgcgcgccgcc
aacggcttcgacctgggcttcgcgctgggcccgcgcatcaacgccgccggccgcctggcc
gacatgagtctgggcatcgcctgcctgaccaccgacgacgaggcccaggcgctggagatg
gcgcgcgagctggacaacatcaaccgcgagcgtcgcaccatcgaggccgagatgcgcgaa
caggccatggcggccatggaagcgcccgacgccgcgcccggcgccacggtctgcgtgttc
gacccgggctggcaccagggcgtggtcggcctggtggcctcgcgcctgaaagagaaattc
tggcgccccaccctggccttcgcgccggccggcgacgacgagatccgcggctcgggccgt
tcgatccccgacgtgcacctgcgcgacgtgctggacctggtgtccaagcgccaccccaac
ctgatccgcaagttcggcgggcacgccatggcggccggcctgacgctgggccgccaggac
ttcccggccttcgcccccgccttcgatgccgccgtgcgcgaactgaccggacgcgacagc
ttcgagccggtcatcgagaccgacggctcgctcgaatccgggtacgccaacgccgaagtc
gccggcctgctgcagcagcaggtctggggcgcgggttttgccgcgcctttgttcctggac
gaattcgtggtgcgcaaccagcgcctggtcggcgaaaagcacctgaaactgtcgctcgaa
cgcggccagcagcgcttcgacgccatctggttcggccacgaccagtccttgcccgaacgc
atccaggcggcctaccggctggagcagaacgtgtggaacggaatggtgtcggtacagttg
gtgattgaacacgccgggtga
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