Achromobacter denitrificans: APT56_25805
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Entry
APT56_25805 CDS
T04244
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
adt
Achromobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
adt03016
]
APT56_25805
Enzymes [BR:
adt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
APT56_25805
Transfer RNA biogenesis [BR:
adt03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
APT56_25805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ALX86313
LinkDB
All DBs
Position
5782492..5783022
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AA seq
176 aa
AA seq
DB search
MPTARLFYALWPDPPMAQTLSAWAALAQPHSHGRPMRTETLHMTLAFLGQVEREIADELI
DATAYHRLQPGSVTLDRYGVFARPRILWAGPAQTPDALQASHDGLWLWLSAFGFVPPAQP
FRPHVTLLRNIERHDPPASAPPPLTWRYDRMVLVASESTDGGSRYRVVARSRPQPG
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgcccgcctcttctatgccctgtggcccgacccgcccatggcacaaacgctg
tccgcctgggcggccctggcccagccgcacagccacggccgccccatgcgcaccgaaacc
ctgcacatgacgctggccttcctggggcaggtggaacgcgaaatcgccgacgaactgatc
gacgccactgcctaccaccgcctgcaacccggcagcgtcaccctcgatcggtacggcgtc
ttcgcccgcccccgcatcctctgggccggccccgcccagaccccggatgcgctgcaggcc
agccatgacggcctgtggctgtggctatcggccttcggcttcgtcccgccggcccaaccc
ttccgcccccacgtcacgctgctgcgcaacatcgaacgccacgatccgcccgccagcgcc
ccgccgcccctgacctggcgctatgaccgcatggtgctggtggcgtccgaatccaccgac
ggcggcagccgctaccgcgtcgtcgcccgctctcggccgcaacccggctga
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