Arachis duranensis: 107479312
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Entry
107479312 CDS
T04300
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
adu
Arachis duranensis
Pathway
adu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107479312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adu03019
]
107479312
03041 Spliceosome [BR:
adu03041
]
107479312
03009 Ribosome biogenesis [BR:
adu03009
]
107479312
03016 Transfer RNA biogenesis [BR:
adu03016
]
107479312
Enzymes [BR:
adu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107479312
Messenger RNA biogenesis [BR:
adu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107479312
Spliceosome [BR:
adu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107479312
Complex C
U4/U6.U5 tri-SnRNP related factors
107479312
Ribosome biogenesis [BR:
adu03009
]
Eukaryotic type
Pre-60S particles
Helicases
107479312
Transfer RNA biogenesis [BR:
adu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107479312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
ATPase_2
DUF7579
Motif
Other DBs
NCBI-GeneID:
107479312
NCBI-ProteinID:
XP_015954947
UniProt:
A0A6P4CPI2
LinkDB
All DBs
Position
3:88339219..88346254
Genome browser
AA seq
991 aa
AA seq
DB search
MEELKESPTLGKRKEPEYDSQSERTTEIPTQTKTPEPQKPTPKKPRSSARTCVHEVAVPS
GYNSTKDESLHGTLSNPVYNGPMAKTYPFTLDPFQSVSVACLERNESVLVSAHTSAGKTA
VAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELYQEFKDVGLMTGDVTLSPNATCLVMTT
EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA
TEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDENEQFREENFLKLQDT
FSKQKVVDRGRGAKSNGKHGKGGSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMS
MSKLDFNTQEEKDTVEDVFRSAVLCLNEDDRSLPAIELMLPLLQRGIAVHHSGLLPVIKE
LVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAG
RRGKDERGICIIMIDEQMEMNNLKEMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEH
VIKNSFHQFQYEKALPGIGKRVSKLEEEVALLDASGEAEVSEYHKLKLEIAQLEKKMMAQ
IIRPEMILYFLVPGRLIRVREGGTDWGWGVVVNVVKKPAGGGYIVDTLLHCSPSSNENSS
RPKPCPPRPGEKGEMHVVPVQLPLIAALSKLRVSIPPDLRPLEARQSILLAVQELGNRFP
QGLPKLNPVKDMDIRDSVIVELVTQIEELEKKLFSHPMHKHQDVDQIKCFQRKAEVNHEI
QQLKTKMRDSQLQKFREELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELM
FNGTFNDLDHHQVAALASCFIPGDKSTEQIQLRTELARPLQQLQDSARRIAEIQHECKLD
INVNEYVESTVRPYLMDVIYSWSKGANFADVIQMTDVFEGSIIRSARRLDEFLNQLRAAA
NAVGEVDLEKKFTAAGESLRRGIMFANSLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggaggaactgaaggaatctccaacactgggaaaacggaaggaacctgaatacgattca
caatcagaacgcaccaccgaaatcccaacccaaaccaaaacaccagaaccccagaaacca
actccgaagaagcctcgaagctcagcacgaacctgcgtccacgaagtcgctgttcccagc
ggttacaactccaccaaggacgaatccctccatggcacactctccaaccctgtctataat
ggtcccatggccaaaacctaccctttcaccctcgaccccttccagagtgtctctgttgcg
tgcctcgagcgcaatgagtcagtgcttgtctccgcccacacctccgctggaaaaaccgcc
gtcgccgaatacgccattgcaatgtcgttcagggacaagcagagagtcatctacacttcg
cccctgaaggctctcagcaaccagaagtaccgggagctctatcaggagttcaaagatgtt
ggccttatgaccggtgatgttaccctttcgcctaacgccacttgccttgttatgactact
gagattcttaggggtatgctttacaggggctctgaggttttgaaggaagttgcttgggtt
atctttgatgagattcattatatgaaggatcgtgagaggggtgttgtttgggaagagagt
ataatctttttgccgcccgctattaagatggtttttttgtctgcaactatgtcgaatgca
accgagtttgcagagtggatttgtaatattcacaagcagccttgccatgttgtgtacact
gactttaggcctactcctttgcagcactatgttttccccgtggggggcagtggattgtat
ttggttgttgatgaaaatgagcagttcagggaggagaatttcttgaagctgcaggatact
ttttcaaagcagaaagtggtcgacagaggcaggggtgctaaatccaatggcaaacatgga
aaaggaggttctggcgggtcagacatatacaagattgtcaagatgataatggaacggaaa
ttccaacctgttatcatatttagcttcagcagaagagagtgtgaacagcatgcaatgtcg
atgtctaagcttgacttcaatacccaagaggagaaggacacagtggaagatgtttttcgc
agtgcagtgctctgtttgaatgaagatgacaggagcttaccggcaattgagttgatgttg
ccactccttcagcgagggattgctgtccatcattctggccttcttcctgtcatcaaagaa
ttggttgagcttctcttccaggaaggccttgtaaaggccctctttgctactgagacattt
gcaatgggtttgaatatgccagcaaaaactgttgtgttcactgccgttaaaaagtgggat
ggtgatagtcaccgatatattggatccggtgaatatatacagatgagtggaagagctggg
cgtcgtggcaaggatgagcgcggaatttgtatcataatgattgatgagcaaatggaaatg
aataacctcaaggaaatggttttgggtaaacctgcgcctttagttagtactttcaggtta
agctactactcaattttaaatttgatgagccgtgctgaaggccagttcactgcggaacac
gtgataaaaaattcatttcatcaatttcaatatgaaaaggccttacctggtatagggaaa
agggtgtcaaagctagaggaagaagtagctttgcttgatgcttcaggggaggctgaagta
tctgaatatcataagctgaaactggaaattgcacagcttgaaaagaagatgatggcacaa
ataataagacctgaaatgattctttattttcttgtccctggtcgattgatcagagtgaga
gaaggtggaactgattggggctggggtgttgttgtcaatgttgttaagaaacctgctggt
ggtggttatatagttgatactttgcttcattgttcacctagttcaaatgaaaatagctca
cggccaaagccatgtccgcctcgccctggagagaaaggtgaaatgcatgtggtccctgtt
caattaccattaattgctgctcttagtaaattgagggtctccatacctcctgaccttcgg
cccttggaagcaaggcagagcatattgcttgctgtacaggagctgggcaaccgttttcct
caaggtcttccaaagcttaaccctgtgaaggacatggacatacgtgattctgtgatagtt
gagcttgtaactcaaatcgaggaactcgagaaaaaattattttctcatcctatgcataag
caccaagatgtggatcaaattaagtgctttcagaggaaagcagaagtaaatcatgaaatt
cagcaactgaagacgaaaatgcgtgattctcagctacaaaaatttcgtgaagaattaaag
aatcgctcacgggtcttgaagaagcttggtcacattgatgctgatggtgtagttcagttg
aagggacgggcagcctgcttgattgacacgggcgatgaactccttgtcactgaattaatg
tttaatggtaccttcaatgatcttgaccatcatcaagttgctgcccttgcaagttgtttt
ataccaggagataaatcaactgagcagatacaactgagaactgagcttgctagacctctt
caacagcttcaagatagtgcaagaaggatagcagagatacaacatgaatgcaaattggat
ataaatgtgaacgagtacgtagagtcaacagtgaggccatacttgatggatgtaatatac
tcttggtcaaagggtgcaaattttgctgatgttatacaaatgactgacgtctttgaggga
agtatcatcaggagtgctagaaggcttgatgagtttttgaatcagttgcgtgctgctgct
aatgcagttggggaggtcgatttggagaagaaatttacagcagcaggtgaaagccttcga
cgaggaattatgtttgcaaattctctgtacctatga
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