Arachis duranensis: 107486857
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Entry
107486857 CDS
T04300
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
adu
Arachis duranensis
Pathway
adu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107486857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adu03019
]
107486857
03041 Spliceosome [BR:
adu03041
]
107486857
03009 Ribosome biogenesis [BR:
adu03009
]
107486857
03016 Transfer RNA biogenesis [BR:
adu03016
]
107486857
Enzymes [BR:
adu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107486857
Messenger RNA biogenesis [BR:
adu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107486857
Spliceosome [BR:
adu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107486857
Complex C
U4/U6.U5 tri-SnRNP related factors
107486857
Ribosome biogenesis [BR:
adu03009
]
Eukaryotic type
Pre-60S particles
Helicases
107486857
Transfer RNA biogenesis [BR:
adu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107486857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
107486857
NCBI-ProteinID:
XP_015962906
UniProt:
A0A6P4DCM2
LinkDB
All DBs
Position
4:complement(121771691..121778918)
Genome browser
AA seq
994 aa
AA seq
DB search
MGSVKRKSAEQEQLEIPPSQKQKQQTSNDDSVVEEGCGCVHHVSYPEGYVPNPSGSSNPK
SSEPAKKFPFPLDPFQSQAIACLENNESVMVSAHTSAGKTVVASYAIAMSLRNGQRVIYT
SPIKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAW
IIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDSFQKSLNALVPPNEGDKRKENGKWQKG
LVLGRLGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGVEEKDSIEK
IFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT
ETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVDEK
MEPSTAKMMVKGAADSLNSAFHLSYNMILNQMRCEDGDPENLLRNSFYQFQADRAIPDLE
KQIKILEEERESIVIEEENSLKDYYDLLDQHRSLNKEVHDIVISPRHCLPFLQPGRLVSL
HCTSCDEDHHPIFSEDKLTWGLVINFERVKSNAEDDATIKAEDASYMVDVLTRCVVTKDK
IGKKSVRIVPLKELGQPLVVSVPISQINTITSLRLYIPKDLLPLEARENTLKKVLETLSR
FGEKGLPLLDPEEDLKIQSSSYKKLSRRIEALERLFEKHEIAKSPLIKQKLKMLHRKQEL
TAKIKSIKKTLRSSSALAFKDELKARKRVLRRLGYATGDNVVELKGKVACEISSADELTL
TELMFNGVLKDIKVEEMISLLSCFVWQEKIQDAAKPREELDLLFVQLQDTARRVAQLQLE
CKVQIDVESFVKSFRPDIMEAVYAWAKGSKFFEIMEITQVFEGSLIRAIRRLEEVLQQLI
EAAKSIGETQLEEKFEEAVSKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggttctgtgaagaggaagtctgcagaacaagaacagctggaaattcctccttctcag
aagcagaagcagcaaacctcaaacgacgattccgtcgtcgaagaggggtgcggctgcgtc
caccacgtgtcctatccggaaggttatgttcccaatcccagtggcagcagcaacccaaag
tcgtcggagccagctaagaagttcccgttccctctcgatcccttccagtcccaagccatt
gcttgcctcgaaaacaatgaatccgtcatggtatctgctcatacatctgccgggaaaaca
gtggtggcctcatacgccattgccatgtctctgcgcaacggacagcgcgttatctacact
tcccctatcaaggcccttagcaatcagaagtacagggacttcaaagaagagttctccgat
gtcggccttatgaccggtgatgtcacaatcgatcccaatgcttcctgcttggtcatgacc
accgaaatatggcgcagcatgcagtacaagggctctgaggtcaccagggaagttgcctgg
atcatattcgatgaggtccactacatgcgcgatcgcgaaaggggtgtcgtttgggaagag
agcattgttatgtcccccaagaacgctcgttttgtattcctatctgccaccgtgcccaat
gcaaaggaatttgctgattgggtggcaaaggtgcatcaacagccttgtcatattgtttat
actgattaccgaccaactccactccagcattatatttttcccgcgggaggtgatggccta
tatttggttgtagacgaaaaggggaaattccgcgaagacagcttccagaaatcactgaat
gctcttgttcctcctaatgagggtgataagagaaaagaaaacggcaagtggcaaaagggt
ttggtgctgggaagactgggtgaagaaagtgacatattcaagatggtgaaaatgatcatt
cagcgtcaatacgatcctgtgatactgtttagctttagcaagagggagtgtgagtttctt
gcgatgcagatggcaaaaatggatcttaatggagttgaggagaaggacagcatagaaaaa
atattttggagtgccatggatatgctttcagacgatgataagaaattaccgcaggtttca
aacatgctaccgttgctgaaacgtggaataggagtgcatcattctggcttacttccaatt
ctaaaggaagtgatcgagattttatttcaagaaggactaataaagtgtttgtttgcaaca
gagaccttcagcattggtttgaacatgcctgcaaaaactgttgtttttaccaatgtccga
aaatttgacggggataagtttaggtggttgtctagtggagaatatattcagatgagtggc
cgagctggtcgacgaggtattgatgaacgtggaatatgtatcctcatggttgatgagaaa
atggaaccttcaactgctaaaatgatggttaaaggggcagctgatagtttgaacagtgcc
tttcatttgagctataacatgattttgaatcaaatgcgctgtgaagatggtgatccagaa
aatttgctccgaaattccttttatcagttccaagctgatcgtgccattcctgatcttgag
aaacaaataaagattcttgaggaagagagggaatcaattgttattgaggaggaaaatagt
ttaaaggattattacgatctgctggatcagcacagaagcttgaataaggaggttcatgac
attgtaatatctccaaggcactgcttaccatttttacagcctgggaggcttgtttcactt
cattgtacttcatgtgatgaagatcatcacccaattttttcggaggacaagttgacttgg
ggattggtgattaattttgaaagagttaaaagtaatgctgaagatgatgcaaccataaag
gcagaagatgcgtcttacatggttgatgttcttacaagatgtgtggttacaaaagataag
attggcaaaaagtctgttaggattgttcctcttaaagaacttggacaacctctggtggtt
tcagttcctatctctcagattaatacaataaccagtcttcgtctatatataccaaaggat
cttttgccattggaagctcgagaaaacacactaaagaaagtgttggaaactctttccaga
tttggtgagaaaggtttgcctcttctagatccggaagaagacttgaagatccagagtagc
tcgtacaaaaagttatcccgtaggatagaggctttggagagactatttgaaaagcatgaa
attgcaaagtcaccacttataaagcagaagttaaaaatgttgcacaggaagcaagaattg
actgcaaagataaagtccattaagaaaacattaagatcttctagtgctttggccttcaag
gatgaacttaaggcaaggaagagggttcttcgcaggctaggatatgctacaggtgataat
gtggtcgaattgaaaggaaaggttgcctgtgaaattagtagtgcagatgaattaacctta
acagagctcatgttcaatggtgtcttaaaggacataaaggtggaggagatgatttctctc
ctgtcatgttttgtctggcaagaaaaaattcaagatgctgccaaaccccgggaagaactt
gatctgctttttgtacaattgcaagacactgctcggagagttgcccaacttcagctcgag
tgcaaggtgcaaattgatgttgagagttttgtgaagtcatttaggccggatattatggag
gctgtgtatgcttgggcaaaaggttcaaagttctttgagataatggaaattacacaggtt
tttgagggtagcttgattagggcaattagacggcttgaggaagttcttcagcaactaata
gaagcagcaaagtccattggggaaactcaattagaggaaaagtttgaagaagctgtttcc
aaaatcaagagggatattgtgtttgcagcatccctgtatctctaa
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