Arachis duranensis: 107487224
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Entry
107487224 CDS
T04300
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
adu
Arachis duranensis
Pathway
adu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
adu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107487224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adu03021
]
107487224
03019 Messenger RNA biogenesis [BR:
adu03019
]
107487224
Transcription machinery [BR:
adu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107487224
Messenger RNA biogenesis [BR:
adu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107487224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_PCFS4
zf-C2H2_4
MipZ
Motif
Other DBs
NCBI-GeneID:
107487224
NCBI-ProteinID:
XP_015963324
UniProt:
A0A6P4D6W4
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Position
5:complement(724566..730518)
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AA seq
580 aa
AA seq
DB search
MKFKVASTWTKLDLPSFGVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQ
VQPNLHSVLQGLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGAYDFRGPILGA
HVIKPQSLQQMEHSSSIMDNVGGDRLDSTGTVGNTRGGGLNEWQQKRFSSDNWNIFQTSK
TYNLNDEQRQSPRALIEAYGCHKSREIPSTKLLLVEQPGRNGFGSKFPLARWQDTEEEEF
DWKHVNPGLVDCSRNSSSMQSSVRFSKKRKLSNDPSNPSQYPFTMGAAPPAVNAHGTRPS
GLNTAFPLQKRPNVGHGPNKTQFIHDQLPNQPGPISSNLQNHGQTPQLQFLPPQIPSSTQ
ISHGSSLQGHGASISTPISNPLPDMLGQSLHLHGGILPPLCSSLPTAPSQMMSHPHADAS
VTSQPPPTYLDLLSSLVNHGVISVTNPPTGLDFIGTEFDPDILKVRHEGVISALYGDLPR
QCRSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEASGKESIP
RLLAAEETEEMKDEEELGVPAKKDQSRCALCGEGFDEFYS
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaaggtggcttcgacatggacgaagctagatctaccttcgtttggggtgcct
gccgataaaaaacttccttctctctatcttctggacagtattgtgaagaattttggccag
gaatatgttaaacacttctctttacgtctacctcaagtttactgtgaggcatacaggcag
gttcagcccaatctgcattctgttctgcaaggtctctttggtacctggtcaaagatattc
cctccctctgtcctaagcaatattgaagctcaattgcaatcttcaccagcagttaataat
caacaatcctttgctaatcaccttggggcatatgattttcgtggaccgattcttggggca
catgtcattaaaccacaatccttgcagcagatggaacactctagttcaatcatggataat
gttggtggtgatcggttggattcaacgggaactgtaggtaatacaagaggaggaggattg
aatgaatggcagcaaaagagattttctagtgataattggaacatatttcaaacttccaag
acttataatcttaatgatgaacaacgtcaaagtccaagagctcttattgaggcatatggt
tgtcacaaaagccgtgaaattcctagtactaagcttttattggtggagcagcctggcaga
aatggttttgggagcaagtttccattggcaagatggcaggacactgaagaagaggagttt
gattggaaacatgtgaatccaggattagtagactgtagtagaaacagcagttctatgcaa
tcaagtgttagattctccaagaaaaggaagttatctaatgatccatctaatccttcacag
tacccctttactatgggggctgctccccctgctgtcaatgctcatggcactcgtccttcc
ggcttgaatacagcatttccattgcaaaaacgtcctaatgtaggtcatggcccaaataaa
actcagtttatacatgaccaattgcctaatcaacctggaccaatttcctctaacctgcaa
aatcatggacaaacacctcaactacagtttcttccacctcaaattccatcttcaacacaa
attagtcatgggagctctttgcaaggacatggtgcctcaataagtacgcccatctcaaat
ccattacctgatatgctgggccaaagtttacatttacatgggggaatcttgccaccttta
tgttcaagcctcccaactgctccatcacaaatgatgtctcatccccatgccgatgcttca
gtgacaagtcaaccaccacctacatatcttgatttgcttagttcactagtgaaccacggt
gtgatctcggtaactaatccacccaccggactggatttcattgggacggagttcgatcca
gatatcttgaaggttcgtcatgaaggtgtaatcagtgccttatacggtgatcttcctaga
caatgcaggagctgtggtctccgattcaaaaggcaagatgagcacagtagacatatggat
tggcacgtgactaggaaccgaatgtcaaaaagccggaagcagaaggggtctcaaaagtgg
tttgcaagtgggagcatgtggctgagtggtgcagaggcttcgggaaaggaatcgattcca
aggttgttggctgccgaggagacagaggaaatgaaagatgaggaagagttaggcgttcct
gctaaaaaggatcagagtcgatgtgcactatgtggagagggcttcgatgagttttacagc
tag
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