Arachis duranensis: 107493854
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Entry
107493854 CDS
T04300
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
adu
Arachis duranensis
Pathway
adu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
adu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107493854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adu03021
]
107493854
03019 Messenger RNA biogenesis [BR:
adu03019
]
107493854
Transcription machinery [BR:
adu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107493854
Messenger RNA biogenesis [BR:
adu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107493854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
107493854
NCBI-ProteinID:
XP_015970374
UniProt:
A0A6P4DLN3
LinkDB
All DBs
Position
6:complement(55630076..55636714)
Genome browser
AA seq
1030 aa
AA seq
DB search
MNMESTRRSFDRSREPGAKKPRLIDELDSSSNPISRPFSQPRQPPSSAVTPLTSATARFR
TNSDRDFESSDRYHPQPPPHQELVSQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIA
GTVCTNILEVPNEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYKQVDPPVHSSM
RHLFGTWKGYFPPQTLQMIEKELGFTPAVNGSASSSATLRSESQSQRPAHSIHVNPKYLE
RQRLQQSSRIKGVANDTTRAILNSNEDSERSSRVLGASRPWLDPRINMHVCRRIQRDAYN
NSVPEKSLAESYGAIKNSSGISSIGTTGSRVTELGHDKTWYKAGISVAENTSNQSNGFSL
KLGFSNREAPKSMNLGAHHQPTQNLTSIQSSVVPGSWKNSEEEEFMWDEMNSGMIGDGAA
SIANNMNTEPWMGGDDENLDGDQSQILHHDREISTARKQSFASGGHSSLPWQLQEQRSNE
KLNLRPGHSEELLSALGCLPANTSSLVVRMPNQSSMPNATKDMSETMGQKQFDSMGTKPT
SVQSPLQQQSASLPVTKLHPHPTQNLLEQDNGKASKTSQFLGDLQRQYIRDQPAALPPNA
QVGRLHRSREKDLHGPLSSETSFLPRHQQQPLVSSQTEVIAKTKPLHSKVSLASESSEQS
KSSLSAATVQTRFLNKSITNSFPGTSSSLVTKNLPSDLGVCPALSGRPSSATLISSVSAV
ASPSTLVPPDDDSSILDNISQANTGQKPKVSTKLPTSSNMSTVSAPTSTATKNNSLNPIA
NLLSSLVAKGLISTDSESSTKVPTEALVQLEARTESITASSSLPVPSVTGSTVLPVTSSK
VVEDDAKASLIVSQSTNTKIRNIIGFDFKPDIVREMHPTVIKGLLDDSQHHCRFCGIKLK
QEEQFNKHLEWHFAREREQHGLIRASRKWYENWFLSEPSDSVDDYCEETDRSPFDAMVPA
DESQCLCVLCGDLFEDVYCQERDEWMFEGAVYINNLDRNGEMESRNVGPIVHAKCLSENS
VAGGIKMEQD
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggagagcacgcgtagatcgttcgatagatcgagagagccgggcgccaagaag
ccccgattgatcgacgagctcgacagcagttccaaccccatttcccgaccgttttctcag
ccgcggcaaccgccgtcctctgcggttacaccgttgacttccgccaccgcgaggttccga
actaacagcgacagggacttcgaaagcagcgacaggtaccacccgcaaccgccaccgcac
caggagcttgtatctcagtacaaggccgcgctagctgagctcactttcaactcgaagcca
ataattacgaacttgaccatcattgcaggagagaacctttctgctgcgaaggccattgct
ggcaccgtttgtaccaacattctagaggttccaaatgaacaaaagcttccatctctttat
ctcttggacagtattgttaagaatattgggcgggattatataaaatactttgctgccaga
ctacctgaggtattcatcaaggcatacaaacaggttgatccacctgtccattcaagtatg
aggcatctttttggaacttggaagggatactttcctccgcagacccttcagatgattgaa
aaggaacttggcttcacacctgcagtcaatggttcggcttcttcatctgctacactcaga
agtgaatcacagtcacaacgcccagctcatagcatccatgtgaatcctaagtatttagaa
cgacagcgtcttcagcagtccagcaggattaaaggagtagctaatgatacgactagagct
attttgaactcaaatgaggattcagagaggtcaagtagagttttgggtgcttcacgaccg
tggctagatcctaggattaacatgcatgtatgtaggcgtattcaaagagatgcatataac
aattctgttcctgagaagagtttagctgaatcctatggggccataaaaaatagttctggt
atttcaagtattggaacaactggcagtagggttactgagctgggacatgataaaacttgg
tataaagcaggaatcagcgtggcagagaacacgtctaatcaaagtaatggtttcagtttg
aagcttggtttttcgaatcgtgaagcaccaaagtcgatgaacttgggtgcacatcatcag
ccaacacaaaacttaactagcatacagagcagtgtagtgccaggtagctggaaaaattct
gaggaagaggaattcatgtgggatgaaatgaactctggaatgattggtgatggtgcagcc
agcattgccaacaacatgaatacagaaccatggatgggtggtgatgatgagaatttggat
ggagatcaatcccaaatcttgcaccatgatagagaaatatctactgctaggaaacaatca
tttgcatctggggggcattcatcattgccatggcaattgcaggagcagagatcgaatgaa
aagttgaatctgaggccaggtcactcggaagaattgttgtcagctttaggttgcttacca
gctaatacaagttctttggttgtcaggatgccaaatcagtcttccatgccaaatgcaacc
aaagatatgtctgaaactatgggacaaaagcaatttgattccatgggaacaaaacccact
tctgtgcagtcacctttgcagcagcagtctgcatcattgcctgtaacaaagctccaccct
catccaacacaaaatttgttggagcaagacaatgggaaggcttctaaaacatcacaattt
ctgggagatctgcagagacaatacattagagatcaaccagctgcccttcctcccaatgct
caagttggtcgtttgcatagatctagagaaaaggatttgcatggtcctttatcttcagag
acttcttttctgccaaggcatcagcagcagccactggtctcttcccagactgaagttatt
gcaaaaactaagcctctccactctaaagtctctttggccagtgaaagttcagaacaatca
aaaagtagtttgtcagctgcaactgtgcagactagattcctcaacaaatcaattacaaat
agttttcctggtacaagtagtagtctagttacaaagaatcttccatctgacttgggggtt
tgcccagctctatcaggtagaccctcgtctgccacattaatttcttcggtatctgcagtt
gcatcaccgtcaacattagttcctccagatgacgattcttctattctggataacatatca
caagcaaatactggacagaaaccaaaggtctctacaaaattaccaacttcctctaacatg
agcactgtgtcagctccaacctcaaccgctacaaaaaacaattccttgaatcccattgca
aaccttttaagctcactggttgcaaaaggtttgatatctacagattcggagtcatcgact
aaggtaccaacagaggcattggttcaattggaagcccgtactgaaagcattactgccagt
agctcattgccagttccttcagttactggttccacagttctcccagtaacatcctctaaa
gttgtggaagatgatgcaaaagcctccctgatcgtaagtcaatcaaccaacaccaaaata
aggaatatcatcggctttgattttaagcctgatatagttcgagagatgcatcccactgta
atcaagggattattggatgatagtcagcatcattgcagattttgtggtattaagcttaaa
caggaagaacagttcaacaaacacttggagtggcattttgcacgagaaagagagcaacat
ggtctaattagagcatccagaaaatggtatgagaattggtttctgtctgagcctagtgat
tctgtagacgattattgcgaggaaacagacaggagtccatttgatgctatggttccagct
gatgaaagccagtgcttgtgtgtattgtgtggtgatctgtttgaagatgtgtactgtcaa
gagagggatgaatggatgttcgaaggtgctgtttacataaacaacttagatagaaatggt
gagatggaaagtagaaatgtggggccaattgttcatgctaaatgtttatctgagaactca
gtagctggcggcatcaagatggaacaggactga
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