Acinetobacter defluvii: DJ533_09915
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Entry
DJ533_09915 CDS
T05474
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
adv
Acinetobacter defluvii
Brite
KEGG Orthology (KO) [BR:
adv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
adv03016
]
DJ533_09915
Enzymes [BR:
adv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DJ533_09915
Transfer RNA biogenesis [BR:
adv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DJ533_09915
Prokaryotic type
tRNA splicing ligases
DJ533_09915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
OrtA
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AWL30492
UniProt:
A0A2S2FJG3
LinkDB
All DBs
Position
1601297..1602559
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AA seq
420 aa
AA seq
DB search
MSVIEQIEKQATNERAYNIIQDAKGVPIKMWTKGVPVDEKSQDQLLRTAQMPFIYKWMAV
MPDVHFGLGATIGSVIPTKGAIIPAAVGVDIGCGMMATRTSLTASDLPDNLHALRTELER
LIPHGMTKTRGSGRDKGSWNKPSERVDAAWAELVADFELICAKHPRLKNTNNRTQLGTLG
TGNHFVEICLDEYQQVWIMLHSGSRGVGNAIGTHFIDLARKDMQKHFINLPDKDLAYLVE
GTEHFDDYWFAVGWAQRFALKNRELMMEAAIQALATIVKKPFNAKLEAVNCHHNYVNKEE
HFGEEVLITRKGAVRARLGEYGIIPGSMGAKSFIVKGKGNQESFCSCSHGAGRVLSRTAA
KKQFTVADQIAQTQGVECRKDEAVIDEIPSAYKPIEDVMKAQSDLVEVVYTLNQVVCVKG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtcattgaacaaatcgaaaaacaagccaccaatgagcgtgcttataacattatt
caggatgccaaaggcgttccaattaaaatgtggactaaaggtgtccctgtcgatgaaaaa
tcacaagatcaattattaagaactgcacaaatgccgtttatttataaatggatggcggtg
atgcccgatgtacattttggtttaggtgcaaccattggaagtgtgattccgaccaaaggc
gcaattattcctgctgcggtgggtgtcgatattggttgcggaatgatggcgacacgcact
tccctgactgcttctgatttacctgataatttacatgcacttcgtaccgaacttgagcgt
ttaattccacatggaatgaccaaaactcgtggtagcggacgtgataaagggtcttggaat
aaaccctctgaacgtgttgatgcagcttgggcggaattggtggctgattttgagttgatt
tgtgccaagcatccacgtttaaaaaataccaataaccgtactcaacttggaactttggga
acaggaaaccattttgttgaaatctgtttagatgaatatcaacaggtttggataatgtta
cattcgggttctcgtggggttggaaatgcaatcgggacacattttattgatcttgcacgt
aaagatatgcagaagcatttcattaatttgcctgataaagatttggcgtatttggttgaa
ggtactgagcattttgatgattattggtttgcggtgggttgggcgcagcgttttgcctta
aaaaatcgtgaattgatgatggaagctgcaattcaggcgcttgcaacgattgtgaaaaaa
ccgttcaatgccaaattggaagcggtaaattgtcatcataattatgtgaataaggaagaa
catttcggtgaagaagtcttgattacccgtaaaggtgcggtacgtgcacgtttgggtgag
tatggcattattcctggttcgatgggtgcgaagtcttttattgtcaaaggtaaaggaaat
caggaatcgttttgttcatgctcgcatggtgcaggtcgtgtgttaagccgtactgcggca
aaaaaacagtttaccgtagcggatcaaattgcacagacgcaaggtgtggaatgtcgtaag
gatgaagcggtgattgatgagattccgtctgcctataaaccgattgaagatgtgatgaaa
gcgcagagtgatttggtggaggtggtgtatacattgaatcaagttgtttgtgtgaaaggg
taa
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