Achromobacter deleyi: HLG70_15210
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Entry
HLG70_15210 CDS
T07788
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ady
Achromobacter deleyi
Pathway
ady03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ady00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLG70_15210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ady03019
]
HLG70_15210
03009 Ribosome biogenesis [BR:
ady03009
]
HLG70_15210
Enzymes [BR:
ady01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HLG70_15210
Messenger RNA biogenesis [BR:
ady03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HLG70_15210
Ribosome biogenesis [BR:
ady03009
]
Prokaryotic type
rRNA processing factors
HLG70_15210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QVQ24259
LinkDB
All DBs
Position
3389027..3392086
Genome browser
AA seq
1019 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLELPQGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSV
DVNSARSTRGADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPH
HHIERLRHDDPRLEELKTSFELVEAPATDAPWQPRESEIKARPEALVKGITPSQPAPVST
PAAPVAAPAAPATSGGLGGLFKRLVGWLTGNAEPAKPAPTAQEESAKRATSSRGKGRSGH
DGQERRGERHGSDRNRNRRGESRNEGAEGTEGGRHHVRGNRRSEGERGERHNRNEARGER
DTQATQAALASSRPEQATELNGEDTGAGRNRRRGRGRNRREEGQSDAPMSEQESMVAALA
QTVATALPDAKPATASAQDADEAAELAADAIPTADDAEGAADPERKRRRRRSRRGRRSQE
EAGLAGSDEQQEDGSDDDAGEQAEGVAAQPAQAAEEAQAPKAEAAPVQAQQVQAATAQAE
EVAAQPVQVEARQVEAQQVETPKAEPVQAAAEPVAQPVQTAAPEVTQPVAVEPASQASAP
AEPEQAPVQAPAVEPVVAKAPAAPVTEVAAVAAAPAPAPVAPVTAQPIVVPATAPSAKSQ
ALHDVLNAAGLQWVETDPDRHAQTQLRIAAAHTPTRLGRERKPVAPVSNEPLVQVETHH
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgttcaatgcgacgcatcaggaagaattacgcgtcgctatcgtcgat
gggcaaaaactcatcgacctcgacatcgagactgccggccgcgaacaacgcaaaggcaac
atctacaaaggtgtcatcacccggatcgaacccggcctggaagcctgcttcgtcaactac
ggcgaagaccgtcacggctttctgcccttcaaggaagttgcccgcagcttcttcaaggaa
ggcgtggatgtccgtagcgcccgtatccaggacgccctgcgcgaaggccaggaactgatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgcagccctgaccacgttcatctcg
ctcgcaggccgctacctggtcctgatgcccaacaacccccgtggcggtggcgtttcgcgc
cgcgtcgagggcgaggaccgccaggaactgcgcgacaccatggagcagctcgagctgccc
cagggcatgagcatcattgcgcgcaccgcgggcatcggccgtaacgtcgaagaactccag
tgggacttgtcctacctgttgcagctctggacggccatcgatggcgccgcgcgcgacaac
tccgcgcccatcctgatctacctggaatccagcctggtcatccgggccatccgcgattat
ttctcgcccgaaatcggcgagatcctgatcgataccgacgagatcgccgaccaggccacc
gccttcatgagcgtggtcatgccggacaacgtccagcgcgtcaaacgctaccgcgacgat
atcccgctgttctcgcgcttccagatcgaacatcagatcgaaacggcgtactcgcgcacc
gtgcagctgccttcgggcggcgccatcgtgatcgatcacaccgaagcgctggtctccgtc
gacgtcaactccgcccgctccacccgcggcgccgacatcgaggaaaccgcgctgcgcacc
aactcggaagcggccgacgaagtagcccgccagttgcgcttgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagacagcaagaaccagcgcgcggttgaacagcgc
ctgcgtgatgccctccatttcgaccgcgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccggccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgcgctgcac
gtgctgcgcctgctgcaagaagaggcgatgaaggaaaacaccgcggcggtccacgcccag
gtgccggtcgatgtggccacctaccttctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctgatgctgatccccaacaagcatctggaaacgccgcac
caccacatcgagcgcctgcgccacgacgatccgcgcctggaagaactgaagaccagcttc
gagctggttgaagcgccggccacggatgcgccctggcagcctcgcgaaagcgaaatcaag
gctcgtccggaagcgctggtcaagggcatcacgccctcgcaacccgctcccgtctcgacg
cccgcggccccggttgcggcgcctgccgctcccgccacgagcggcggcctgggcggcttg
ttcaagcgcctggtcggctggctgaccggcaacgccgaacccgccaagcctgcacccacc
gcccaggaagaaagcgccaagcgcgccacctccagccgcggcaagggtcgcagcggccat
gacggccaggaacgccgtggcgagcgccacggttcggaccgcaaccgcaaccgtcgcggc
gaatcgcgcaacgaaggcgccgaaggcaccgaaggcggccgtcaccacgtgcgcggcaac
cgccgctccgagggtgaacgcggcgaacgccacaaccgcaacgaagcccgcggcgaacgc
gacacccaggccacgcaagcggccctggcgtccagccgccccgagcaagccacggaactc
aatggcgaggacaccggcgccggtcgcaaccgccgtcgtggccgcggccgtaaccgtcgc
gaggaaggccagtccgacgcgccgatgagcgaacaggaaagcatggttgccgcgctggct
cagaccgtcgccaccgcgctgcccgacgccaagccggccacggcatccgcgcaggacgcc
gatgaagccgccgagctggcagccgatgccatcccgaccgctgacgacgccgagggcgca
gctgatcccgagcgcaagcgccgccgccgccgcagccgccgtggccgccgcagccaggaa
gaagcaggcctggccggcagcgacgagcaacaggaagacggttccgacgacgacgccggc
gaacaggcggaaggcgtagccgcccagcccgcccaagccgccgaagaagcgcaagccccc
aaggccgaagcggctccggtgcaggcgcaacaggtgcaggccgctaccgcgcaggcagag
gaagttgccgcccagccggtgcaggtcgaggcccgtcaggtcgaagcccaacaggtcgag
acccccaaggccgagcctgtgcaagccgccgctgaacccgtggcccagcccgtgcaaacg
gctgctcccgaggtgactcagccggtcgccgtggaacctgccagccaggcttcggctcct
gccgaacccgagcaagctccggtgcaagcgcctgccgtggaacccgtggtggcgaaggcc
cccgccgcgcccgtgaccgaagtggcagccgttgcggccgctccggctccggcccccgtg
gctccggtcaccgcacagcccatcgtggtgccggcaacggcgccgtcggccaagtcccaa
gccctgcacgacgtgctcaacgccgccggcctgcaatgggtggaaaccgatccggaccgc
cacgcgcaaacgcagctgcgtatcgccgcggcgcacacgccgacccgcctgggccgcgag
cgcaagcctgtggcacccgtttcgaatgagcccctggttcaagtcgaaacgcaccactaa
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