Achromobacter deleyi: HLG70_27345
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Entry
HLG70_27345 CDS
T07788
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ady
Achromobacter deleyi
Brite
KEGG Orthology (KO) [BR:
ady00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ady03016
]
HLG70_27345
Enzymes [BR:
ady01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HLG70_27345
Transfer RNA biogenesis [BR:
ady03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HLG70_27345
Prokaryotic type
tRNA splicing ligases
HLG70_27345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QVQ26506
LinkDB
All DBs
Position
complement(6037463..6038698)
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AA seq
411 aa
AA seq
DB search
MQRRTTMTYQLHQVAGGVPLKMWTRGVPIEDEARQQLENAARLPIIHKHIAAMPDVHYGI
GATVGSVIPTVKAVIPAAVGVDIGCGMMACKTTLHANDLPDNLAPLRSAIERAVPHGLTP
RHHGRDRGSWDTPPSETDLAWRALAPEFEALCQDYPRLAKTNNYRHLGTLGTGNHFIEVC
LDEHGSVWFMLHSGSRGVGNAIGTMFIQLAKQDAEQHQRNLPDQDLAYFEEGSKYFGDYV
RAVGWAQKFARANREVMMSRVVNAVRQVIAKPFDAHMEAVNCHHNYVSRETHFGEEVLLT
RKGAVSAKAGEMGIIPGSMGAKSYIVRGKGNPESFMSCSHGAGRAMSRTKAKKLFTVADQ
IAATEGVECRKDANVIDEIPMAYKDIDAVMLAQQDLVEVVYTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggagaacaacaatgacctatcaactgcaccaagtcgccggcggcgtgcccctg
aaaatgtggacgcgcggcgtacccatcgaggacgaagcgcgccagcaacttgaaaacgcg
gcccgcctgcccatcatccacaagcacatcgccgccatgcccgacgtgcactacggcatc
ggcgccaccgtgggttcggtgattcccacggtaaaggcggtgattcccgccgcggtcggc
gtggacatcggctgcggcatgatggcctgcaagacgacactgcacgccaacgacctgccc
gacaatctggccccgctgcgctccgcgatcgaaagagccgtaccccatggactgacaccg
cgccaccacggccgcgaccgcggttcctgggacacgccgcccagcgaaacggacctcgcg
tggcgcgcgctggcgccggagttcgaggccctgtgccaggactatccgcgcctggccaag
accaacaactaccgccacctgggcacgctgggcaccggcaaccacttcatcgaggtgtgc
ctggacgaacatggttcggtgtggttcatgctgcactccggctcgcgcggcgtgggcaac
gccatcggcaccatgttcatccaactggccaagcaggacgccgagcagcaccagcgcaac
ctgcccgaccaggatctggcgtacttcgaggaaggctccaagtacttcggcgactacgtg
cgcgccgtgggttgggcgcagaagttcgcgcgcgccaaccgcgaggtcatgatgagccgc
gtggtaaatgccgtgcgccaggtgatcgccaagccgttcgacgcgcacatggaagcggtg
aactgccaccacaactacgtcagccgcgaaacccacttcggcgaagaagtgctgctgact
cgcaagggcgctgtaagcgccaaggcgggggaaatgggcatcatccccggcagcatgggg
gccaagagctacatcgtgcgcggcaagggcaacccggagagcttcatgagctgcagccat
ggcgcgggccgcgccatgagccgcaccaaggccaagaaactgtttaccgtggccgaccag
attgccgcaaccgaaggcgtggagtgccgtaaggacgccaacgtcatcgatgaaatcccg
atggcctacaaggatatcgacgcggtgatgctggcccagcaggacctggtcgaagtggtc
tacacgctgaagcaagtggtatgcgtgaagggttga
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