Arcobacter defluvii: ADFLV_0124
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Entry
ADFLV_0124 CDS
T06891
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
adz
Arcobacter defluvii
Pathway
adz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADFLV_0124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adz03019
]
ADFLV_0124
03009 Ribosome biogenesis [BR:
adz03009
]
ADFLV_0124
Enzymes [BR:
adz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ADFLV_0124
Messenger RNA biogenesis [BR:
adz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ADFLV_0124
Ribosome biogenesis [BR:
adz03009
]
Prokaryotic type
rRNA helicases
ADFLV_0124
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Ribosomal_L12_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKF76193
UniProt:
A0AAE7E6D7
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All DBs
Position
103660..105195
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AA seq
511 aa
AA seq
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MTFKDFNFKEQLQKAIEEAGFKEPSPIQEQAMPFILNGKDIVGQAHTGTGKTAAFGLPIL
NRLKGKSGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENASI
IVATPGRFLDLLRGEKIDIKPDFVILDEADEMLDMGFLDDIKEIFTFLPKERQTLLFSAT
MPVAIKNLAKTILNEPEFVTLTKSDVTNAKITQTFYVVDERERDDALIRLYDFKNPKKSI
IFCRTKKEVDRLSTFLVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAARGL
DVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMLQKIEKNIGTKLE
AKIVPNISSVKTKKIADLKQQIIDQEIKDYALELVEELKEEFDISTIAFKLASMISASTY
VQGNNNIGKSESDIKRLIENSLRGGDESSGRNSRGRGGRFSSRGSDRDRDRRKDTRSGSG
DRNSRPSSDRSKFPKSDKPSKPRTERSRKRD
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaaagatttcaattttaaagaacaattgcaaaaagcaattgaagaagcaggt
tttaaagaaccaagtcctatccaagaacaagcaatgccatttattttaaatggaaaagat
attgttggacaagcacatacaggaacaggtaaaacagcagcatttggacttccaatttta
aacagattaaaaggtaaatcaggtgttgaagcagtagttatcgttccaactagagaactt
gcaatgcaagtttctgatgaattatatagatttggaaaattcttaggaataaatactgca
acagtttatggtggtcaagcatatgctagacaaattaaacttattgaaaatgcaagtatt
attgtagcaactcctggaagatttctagatttattaagaggtgaaaaaatagatattaag
cctgactttgtaattttagatgaagcagatgaaatgcttgatatgggatttttagatgat
ataaaagaaattttcacttttttaccaaaagagagacaaactttattattttctgcaact
atgccagttgctattaaaaatcttgcaaaaacaattttaaatgagccagaatttgttact
ttaactaaaagtgatgtaacaaatgcaaaaattactcaaactttctatgttgttgatgaa
agagaaagagatgatgcattaattagactttatgattttaaaaatccaaaaaaatcaatt
atattctgtcgcactaaaaaggaagttgatagattatcaactttcttagtttctcaagga
ttcatggctaaaggtcttcatggagatatggagcaaagacaaagagaagaagcaattaga
gcgtttaaaacttctaaacttgaaattttaattgcaacagatgtagctgctcgtggttta
gatgtaaatgatgttactcatgtatttaattaccatttaccatttgattcagagtcttat
gtacatagaattggtagaactggaagagcaggaaaagaaggtgttgcaatttctattgtt
actccacatgaatttagaatgttacaaaaaattgaaaaaaatattggaacaaaattagaa
gctaaaattgttccaaatattagttctgtaaaaactaaaaaaattgcagatttaaaacaa
caaattattgatcaagagattaaagattatgctttagaattagtagaagaattaaaagaa
gaatttgatatttctacaattgcttttaaacttgcttctatgatttcagcatcaacttat
gttcaaggaaataataatattggaaaatcagaatctgatattaaaagattgattgaaaac
tctttaagaggtggagatgaaagttctggaagaaactctagaggtagaggaggaagattt
tcatcaagaggttcagatagggacagagatagaagaaaagatacaagaagtgggagtggg
gatagaaatagcagaccttcttctgatagaagtaaatttcctaaaagtgataaaccttca
aaacctagaacagaaagaagtagaaaaagagattaa
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