Aeromonas sp. ASNIH3: C2U39_04085
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Entry
C2U39_04085 CDS
T05427
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
aea
Aeromonas sp. ASNIH3
Brite
KEGG Orthology (KO) [BR:
aea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aea03019
]
C2U39_04085 (hrpB)
Enzymes [BR:
aea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C2U39_04085 (hrpB)
Messenger RNA biogenesis [BR:
aea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C2U39_04085 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_22
ResIII
AAA_16
AAA_19
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AUV11447
UniProt:
A0A2I8QYZ6
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All DBs
Position
800722..803175
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AA seq
817 aa
AA seq
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MSSLPIVPVLPELFAALDNHTSVILQAPPGAGKSTLLPLELVRQHRLPGRIIMLEPRRLA
ARNIASFLARQLGEKVGERIGLRVRGESRTSSQTRLEIVTEGVLTRMLQQDPELSGVSLV
IFDEFHERSLHADTALAFAIESQQGLRDDLKLLVMSATLDGMALERLLPGAPVVRSEGRC
FPIEYHYRPANRQQWLEPQVGAVVLEALASQAGSALVFLPGQGEIERLAQWLEGRLPGDV
TLAPLYGRLDLAAQQAAIEPAPAGRRKLVLTTNVAETSLTIEGISVVIDSGLERRATFDI
KSGVTRLETRPIAKASATQRAGRAGRLGPGVCYRLWSCEVQERLAEQSPPDILTQELTGL
LMDAAQWGARVEALPLLDMPPPAAVASARRLLVALGAMAPEGEQQLTPAGRAMAAFGTHP
RLARMLLRARELESEGLTGIVADAAFLVALLEEDLRGSERLSVLFHRRQGALRQGAARWF
ERLGVRASSPQGQWLGLLCALAWPDRIGKLRSGSRYQLSGGVSCDLVEGHPCQGQGAIVA
VEMGQNERGSRIFIAEPVALDELVRQLPELVSERQWFDWDDREERVRAERQQVLGELVLG
QRPLTDLSDEQKGHCLLQGIRRKGLHVLPWDESSEGLLARLRCARDWLPDEAWPAMDEES
LLADLEQWLLPAVSGMTRLEQLKRLDMSDILRQSLPWPLPRRLDEALPSHFTAPTGSRVR
IRYQPGQAPAIPVRIQEMFGLGATPCVADGRVPLVVELLSPAQRPLQITADLAAFWAGSY
EQVKKEMKGRYPRHYWPDNPLEAMPTRVTKKKMGLQE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccctccccatcgtcccggtgttgcccgaactctttgcagccctcgacaaccat
accagcgtgatcctgcaggcgccccccggcgcgggcaaatcgaccctgctgcccctggag
ctggtgcgccagcaccggctgcccgggcgcatcatcatgctggagcccaggcgccttgct
gcgcgcaacatcgcgagcttcctcgcgcgtcagctgggggagaaggtgggcgagcgcatc
ggcctgcgagtgcgcggggagagccgcaccagcagccagacccggctcgagatcgtgacc
gagggggtgctgacccggatgctgcagcaggatcctgagctcagcggcgtgtcgctcgtc
atctttgacgagttccacgagcgcagcctgcacgccgataccgcgctggccttcgccatc
gaaagccagcaggggttgcgcgatgatctcaagctcttggtgatgtccgccactctggat
ggcatggccctggagcgcctgctgccaggtgcccccgtggtgcgctccgaggggcgctgc
tttcccatcgagtaccactatcgccccgccaatcgccagcagtggttggagccccaggtt
ggcgccgtggtgctggaggcgctcgccagtcaggctggcagtgccctggtgttcctgccg
ggacagggggagatagagcggctggcacagtggctggaagggcggttgccaggggatgtg
accctggctcccctctatggccgtcttgacctcgcggcccagcaagcggccatcgagcct
gcgcctgcgggtcgtcgcaagctggtgctcaccaccaacgtggcggagacctccctcacc
atcgaggggatctccgtggtcatcgacagcggattggagcggcgcgccaccttcgatatc
aagagcggcgtcacccggctggagacccggcccatcgccaaagcctccgccacccagcgg
gcggggcgggcagggcggcttggccccggcgtctgctaccggctctggagctgcgaggtg
caggagcgcctcgccgagcagagtccccccgacatcctgacgcaagagctcaccggcctg
ctgatggacgccgcccagtggggggcccgggtggaggcgctgcccctgctggacatgccg
ccccctgctgccgtggccagcgcccggcggttgctggtggccctgggcgccatggccccg
gagggtgagcaacaacttaccccggcaggccgtgccatggcggccttcggcacccatccc
cgcctcgcccgcatgttgctgcgggcccgggagctggaatccgagggtctgacagggatt
gtcgccgatgcggctttcctggtggcgctgctggaagaagatctgcgaggatcggagcgc
ctgtccgtgctgttccaccgccgtcagggcgccctgcgccagggggcggcccgctggttc
gagcggctcggcgtgcgggcaagcagcccgcagggtcaatggctggggttgctgtgcgcc
ctcgcctggcccgatcgcatcggcaagctgcgcagtggcagccgctatcagctcagtggc
ggggtgagctgcgatctggtagaagggcatccctgccaggggcagggggccatcgtggcc
gtcgaaatgggtcagaacgagcgcggcagccgcatcttcatcgccgagccggtggcgctg
gatgagttggtgcgccagctgcccgagctggtgagcgagcgccagtggttcgactgggac
gatcgggaggaacgggtgcgtgcggagcgccagcaggtgctcggcgagctggtgctcggc
cagcggccgctgacggatctctccgatgaacagaaggggcactgcctgctgcagggcatc
cggcgcaaggggctgcacgtgctgccctgggacgagagcagcgaggggctgctggcccgc
ttgcgctgcgcccgcgactggctgcccgacgaagcctggcccgccatggatgaggagagc
ctgctggccgacctcgagcagtggctgctgccggcggtgagcggcatgacccggctggag
cagttgaagcggctcgacatgagcgacatcctgcgccagtctctgccctggcccctgcca
aggcggctggacgaggcgctgccgagccacttcaccgcaccgaccggcagccgggtacgg
atccgctaccagccgggtcaggcgccggcgatcccggtgcgcatccaggagatgttcggg
ctgggcgccaccccatgcgtggccgatggccgggtccccctggtggtggagctgctctcc
ccggcccagcgccccttgcagatcaccgcggatctcgcggccttctgggcgggatcctat
gagcaggtgaaaaaagagatgaaggggcgctacccccgtcactactggccggacaacccg
ctggaggcgatgccgacccgggtgaccaagaagaagatgggattgcaggagtag
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