Aeromonas sp. ASNIH3: C2U39_05435
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Entry
C2U39_05435 CDS
T05427
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
aea
Aeromonas sp. ASNIH3
Pathway
aea03410
Base excision repair
aea03430
Mismatch repair
aea03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C2U39_05435
03430 Mismatch repair
C2U39_05435
03440 Homologous recombination
C2U39_05435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aea03400
]
C2U39_05435
DNA repair and recombination proteins [BR:
aea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C2U39_05435
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C2U39_05435
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C2U39_05435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
bHLH_IRO3
Motif
Other DBs
NCBI-ProteinID:
AUV11670
LinkDB
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Position
1088293..1090023
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AA seq
576 aa
AA seq
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MPLQIRRRPRVDDSHLPATLHPLLRQIFASRGVEDPALLERSANQLLPPQRLFGMAQAVP
LLAEALTAQKRILIVGDFDCDGATSSALCVLALRAMGGHHIDFLVPNRFEFGYGLTPEIV
ELAVARGAEFLITVDNGISSIAGVAAAKAAGMQVLVTDHHLPGQELPDADAIVNPNQHGC
DFPSKSLAGVGVAFYLMAALNTHLRQSGWYERQGLRAPNVADYLDLVALGTVADVVALDG
NNRILVHQGLQRIRAGRCRPGIQALVDVSGRDGRRLCAADLGFALGPRLNAVGRLDDMSL
GVACLLCDDINLARQFASEMDSLNQERKEIEQGMQQEALVTLEQIRFRDGEVPSGIVLHR
DEWHQGVVGLVASKVKEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGL
MGKFGGHAMAAGLTLPKANIEAFGRAFEAVIGELVTPELLTGVLLTDGELLPDELTLELA
ELIRASGPWGQAFPEPLFDGEFVLVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLQRWP
DASVKRVRLVYRLDVNEWRGNRSVQLLVEHLEAAGL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgcaaatccgtcgtcgtccgcgagttgatgattcccatctgcccgccaccctg
cacccgctgcttcgccagatcttcgccagccgcggggtagaagaccctgccctgctggag
cgcagcgccaaccagctgctgccgccccagcgtctgttcggcatggcgcaggcggtgccg
ctgctggccgaggcgctgacggcgcaaaaacgcattctcatcgtcggtgacttcgactgc
gacggcgccaccagctcggccctgtgcgtgctggccttgcgcgccatgggggggcaccac
atcgattttctggtgcccaaccgattcgagttcggttatggcctcaccccggagatcgtc
gagctggcggtggcccgcggcgccgagttcctgatcacggtggacaacgggatctccagc
atcgccggggtggcggcggccaaggcggcaggcatgcaggtactggttaccgatcaccat
ttgcccggccaggagctgcctgacgccgacgcgatagtgaaccccaaccagcatggctgc
gacttcccctccaagtccctggccggggtcggggtcgccttctatctgatggcggccctc
aacacccatctgcgccagagcggctggtatgagcgccaggggctgcgcgcccccaacgtg
gcggattacctcgatctggtggccctcggcaccgtggccgacgtggtggcgctcgatggc
aacaaccgcattctggttcatcagggtttgcagcggatccgggccggccgttgtcgcccc
ggcatccaggcgctggtggatgtgtcgggccgcgacggtcgtcgcctgtgcgctgccgat
ctcggctttgcgctggggccgcgcctcaacgcggtgggccggctcgatgacatgtccctc
ggagtcgcctgtctgctctgtgacgacatcaacctggcgcgccagttcgcctccgaaatg
gacagcctcaaccaggagcgcaaggagatcgagcaggggatgcagcaggaggcgctcgtc
actttggagcagatccgttttcgtgacggcgaggtgccctccggcatcgtgctgcaccgg
gatgagtggcatcagggggtggtggggctggtggcctccaaggtgaaggagaagtactac
cgcccggtcatcgcctttgccgagagcagcgagaccgagctcaagggatccgggcgctcc
atcccgggggtgcacctgcgcgatgcgctggaactgctcgatacccgccaccccggcttg
atgggcaagtttggcggccacgccatggcggccgggttgaccctgcccaaggccaatatc
gaggccttcggccgtgccttcgaggcggtcatcggcgagctggtgacccctgagctcttg
accggggtgctgctcaccgacggcgagctgctgccggacgagctcaccctcgagctggcg
gagctgatccgcgcctccggcccctggggtcaggcctttcccgagccgctgtttgacggg
gaattcgtgctggtgcagcagcggctggtgggggagaagcacctcaagatgatgctgacc
acggattccggccacgcggtggatgccatcgcctttggcgtcgacttgcagcgctggccc
gatgcctcggtgaagcgggtgcggctggtctaccggctcgacgtcaacgagtggcgcggc
aaccgcagcgtgcagctgctggtggagcatctggaagccgccggcctctga
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