Aeromonas sp. ASNIH3: C2U39_10880
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Entry
C2U39_10880 CDS
T05427
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aea
Aeromonas sp. ASNIH3
Pathway
aea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U39_10880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aea03019
]
C2U39_10880
03009 Ribosome biogenesis [BR:
aea03009
]
C2U39_10880
Enzymes [BR:
aea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C2U39_10880
Messenger RNA biogenesis [BR:
aea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2U39_10880
Ribosome biogenesis [BR:
aea03009
]
Prokaryotic type
rRNA processing factors
C2U39_10880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AUV12620
LinkDB
All DBs
Position
complement(2276422..2279568)
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQQRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KSHIELVRPDFLNRVKLYKGDVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHAQVPVDVAAYLLNEKRTSIANLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPRQAQVVEREQPLLQGFAPAPQPVAPTAPA
PVAAPAPVAEQVGFFGKLAKAFSGLFGASSDAAPAEVKAPADKPAAQREARKDDGHRHQR
DESRSRGQRGRRDDNRGSRNAEAGEKREGAASRESSDRNRRPRKEREPRQEREPRQEREP
RGDVRTEQRMEREPREPRQEREPRAPRPAREPRAPREPRAEVIVEAVDTVDTAVASAEPR
QEKEQKVAERRERRQLRKQIRVDVAATDTPALPSDEHVVTDVADVQAAAEQQEEQGEGQR
RSRRTPRNQRIEGQRRKRINEEARGQREDEAQGEVQLTAAAQADAAQVKVDEPAVPVITI
PSAEAVAAALQASAALTEHVVAEAVAEEAAEQALAAQAVDAPSTDEVEQVAQADAEPVAE
VAVVEPEMVEPIVDTASHDEPVAVIDAVEQTQQVEAIPEEVAPVAEAAPVVIAEETATAE
AKVVEMPAAVVQTEPATSPEMKVSKGAGVLARARKAYAPMATPAAAPAPTPREPVEYAPL
VRSEVVTSGRHGGSTAASNVATSPAGRP
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaggagttgcgcgtagcgctggttgac
ggacaacagctctacgatttggatattgaaagtccgggacacgagcagaaaaaagcgaac
atttacaagggcaaaatcacccgagtagaacccagtctcgaagctgcttttgttgactat
ggcgccgaacgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtg
attgtccagatcgacaaggaagagcgtggtaccaagggtgcagccctcaccaccttcatc
agtctggctggcagctacctggtgctgatgccgaacaacccccgtgccggcggcatctcc
cgtcgcatcgagggtgacgagcggaccgagctgaaggaagccctgagcggactgaccgta
ccggacggcatgggcctcatcgtgcgcaccgccggtgtgggcaagtccccggaagagctg
gagtgggatctgaacgttctgctcaatcactgggactccatccacaaggcgtcacaacaa
cgttccgctccggtgctcattcaccaggagagcaacgtcatcgtgcgcgccatccgtgac
tatctgcgtcgcgatgtgggcgagatcctgatcgacaacccggtcatcttcgagcgcgcc
aagtcgcatatcgagctggtccgccccgatttcctcaatcgcgtgaagctctacaagggt
gatgtcgccctgttcaaccacttccagatcgagagccagatcgaatcggccttccagcgc
gaagtgcgcctgccctccggcggcagcatcgtcatcgatccgaccgaagcactgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagaccgccctgcag
accaacctggaagcggccgatgagatcgctcgccagctgcgcctgcgtgatctgggtggc
ctgattgtcatcgacttcatcgacatgaccccggttcgccatcagcgcgaagtggaaaac
cgtctgcgtgaagcggtgcatcaggatcgtgcccgtatccagctgggccgtatctcccgt
ttcggtctgctggagatgtctcgccagcgtctgcgtccctccctcaacgagtccagcagc
catatctgcccccgttgccagggtcagggggtcatccgtgacaacgaatccctcgccctg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggtgcatgcc
caggtgccggtcgatgtggccgcctatctgctcaacgagaagcgtacctccatcgccaat
ctggaacagcgcaatgatgtgcgtgtctacatcattccgaaccagcatctggaaaccccg
cactacgaagtgacccgcatccgtcagaacgagatcccagaagcggccagctacgagctc
aaaaccgagattgccaagccggtctaccagccgcgccaagctcaggtagtcgagcgtgaa
caaccgctgctgcaagggtttgccccggctccccagccggttgcgcccaccgccccggct
cctgttgcggctcccgctccggttgcagaacaagtcggcttctttggcaagctggccaag
gctttctccggcctgttcggtgcctcctccgatgcggctccggccgaggtgaaggcgcct
gccgacaaaccggccgctcagcgcgaagctcgcaaggatgacgggcaccgtcaccagcgc
gatgaatcccgcagccgtggtcaacgtggccgtcgtgacgacaaccgcggcagtcgcaat
gccgaggccggcgagaagcgtgaaggcgcagccagccgcgagagcagtgatcgcaatcgt
cgcccgcgcaaagagcgtgagcctcgtcaagagcgggaaccgcgtcaggaacgggaaccc
cgtggtgacgtgcgcaccgaacagcgcatggagcgtgagcctcgcgaaccccgccaggag
cgcgaacctcgtgccccgcgtcctgctcgtgaacctcgcgccccccgcgaaccccgtgcc
gaggtgatcgtcgaggcggttgataccgttgatactgcggtcgccagcgctgaaccgcgt
caggagaaagagcagaaagttgctgagcgccgtgaacgtcgccaactgcgcaagcagatc
cgtgtcgatgtcgccgcgaccgacacccctgccctgccgagtgacgagcacgtcgtcacc
gatgtcgccgacgtgcaagccgccgctgagcagcaagaagagcaaggcgaaggtcagcgt
cgctcccgccgtactccgcgcaatcagcgtatcgaagggcaacgtcgcaagcgcatcaac
gaagaggctcgtggccagcgtgaagacgaagcacaaggtgaagtgcagctgactgccgcc
gcccaggccgatgcggctcaggtgaaggtggatgaaccggctgtgcctgtcatcaccatt
ccgagcgcagaagcggttgcagcagccctgcaggcctccgccgcactgaccgaacacgtg
gtggctgaagccgttgctgaggaagcggcagagcaagcactggcagcccaggctgtggac
gcgccctccactgacgaagttgagcaggttgcgcaagcagacgctgaacccgtcgccgaa
gtggcagttgtcgaacccgagatggtcgaacctatcgtcgacaccgcctctcatgacgaa
cctgtagccgtgatcgacgctgtcgagcagacccagcaagtggaggccatcccagaagag
gttgcaccggttgctgaagcggcacctgtcgtgatcgctgaggagacggccaccgccgag
gcgaaggtcgtcgagatgccggctgccgtggtgcaaaccgagccagcaaccagccccgaa
atgaaggtcagcaagggtgccggtgtattggcccgtgcccgcaaggcttatgcccccatg
gcaacgccggctgcggctcctgccccgacaccccgtgaacccgtggagtacgctcccctg
gtacgcagcgaagtcgtgacctccggtcgccacggtggcagcaccgctgccagcaacgtg
gcaaccagcccggccggtcgcccctga
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