Aeromonas sp. ASNIH3: C2U39_11860
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Entry
C2U39_11860 CDS
T05427
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aea
Aeromonas sp. ASNIH3
Pathway
aea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U39_11860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aea03019
]
C2U39_11860
Enzymes [BR:
aea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2U39_11860
Messenger RNA biogenesis [BR:
aea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2U39_11860
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
AAA_19
Helicase_C_2
Cas3-like_C_2
PRAI
Motif
Other DBs
NCBI-ProteinID:
AUV12798
LinkDB
All DBs
Position
2470440..2471828
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AA seq
462 aa
AA seq
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MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML
HRLLANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDA
IKLGVDILVATPGRLLDLLTQGALTLSALEVLVLDEADRMLDMGFITDIRRIMKALPEER
QTLLFSATFSNDIKALADDLLKDPTLIEVDPSNTAAEQVSQRIIQVDRERRREMLSHMIG
RGNWQRVLVFVRTKQIADRLAQQMQKDGLDTVAIHGDKSQGARNRALADFREGKVRVLVA
TDIAARGLDIDQLPHVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLKEIE
ALIGQSLTVEILEGYEPSGKPSRQTLPGSKPVQNPPRARGHANAKGKPAAGKGKGDGAKK
PTQPAQNKSRKREVVGEDIGFAPMRRLPKAQRGDYQDNSNEE
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaatgaactgggtctgtcaccgcacatcctgcgggccgtcaaggagctgggt
tacgaacaacccacccccatccagcagcaagccattcccgccatcctggccgggcaggac
gtgctgggcggcgcccagacaggcacgggcaagacggccggtttcaccctgcccatgctt
catcggctgctggccaaccatggccgtggcggtcgccgccaggtgcgagccctggtgctg
accccgacccgggagctggccgcccaggtgggcgagagcatcatcaaatatgcccaccac
ctgccgtttcgtactctgatcgcctatggcggcgtcagcatcaagccgaacctggacgcc
atcaagctcggggtcgacatcctggtcgccaccccgggccgcctgctggatctgctgacc
cagggcgccctgaccctgagcgccctcgaggtgctggtgctggatgaagcggacagaatg
ctcgacatggggttcatcaccgacattcgccgcatcatgaaggccctgccggaggagcgt
cagactctgctcttctccgccaccttctccaatgacatcaaggcgctggcagacgatctg
ctcaaggatcccaccctcatcgaggtggatcccagtaacaccgccgccgagcaggtaagc
cagcgcatcatccaggtcgatcgggagcgccgccgggagatgctctcccacatgattggc
cgtggcaactggcagcgggtgctggtgttcgtgcgcaccaagcagattgccgacaggctc
gcccagcaaatgcagaaagatggcctggatacggtcgccatccacggtgacaagagccag
ggggcccgcaaccgggcgctggcggattttcgtgaaggcaaggtgcgggtgctggttgcc
accgatatcgccgcacggggtctggacatcgatcagctgccccacgtgatcaacttcgag
ctgccccagatggcggaggattacatccaccgcatcggccgcaccggccgtgccgggcgc
ggcggcgaggccatctccctggtgagccaggacgagctgggtcagctcaaggagatcgag
gcgctgatcggccaatccctgaccgtggagatcctggaagggtacgagccgagcggcaag
ccgagccgccagaccctgccgggcagcaagccggtgcaaaacccgccccgcgcccgtggc
catgccaacgccaagggcaaacccgccgccgggaaaggcaagggggatggcgccaagaag
ccgacccagcctgcgcaaaacaagtcccgcaagcgggaagtggtgggcgaggatatcggt
ttcgcccccatgcgccgcctgcccaaggcccagcggggcgactatcaggacaactccaac
gaggagtga
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