Aeromonas sp. ASNIH3: C2U39_12020
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Entry
C2U39_12020 CDS
T05427
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aea
Aeromonas sp. ASNIH3
Pathway
aea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U39_12020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aea03019
]
C2U39_12020
03400 DNA repair and recombination proteins [BR:
aea03400
]
C2U39_12020
Enzymes [BR:
aea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2U39_12020
Messenger RNA biogenesis [BR:
aea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2U39_12020
DNA repair and recombination proteins [BR:
aea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C2U39_12020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUV12826
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All DBs
Position
2506074..2507996
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AA seq
640 aa
AA seq
DB search
MITSLLTRHFGFDRLRPGQEAVISRLLAGKSAAAIFPTGAGKSLCYQLPALALPHLTLVI
SPLLALMHDQLAFLRSKGIAAATLDSSQTAEESRRVMQQASDGQLKILMISVERLKNERF
RRFIAHIPLSLLVVDEAHCISEWGHNFRPDYLKLPDHRRELAIPQVLLLTATATPAVMAD
MQAKFAIDRDDLVVTGFYRPNLDLAVLPLAGTARDTWLREELQRDPAAPTIVYVTLQHSA
EQCAAQLQASGIRACAYHAGLDPALRSQIQHDFMAGRLDCIVATIAFGMGIDKADIRRVI
HYDLPKSIENYSQEIGRAGRDGLPSRCTVLASRAQLPVLENFVYGDTPDRDAIAHLLDIV
RQSGTEWEFSLLRLSNETNIRQLPLKTLLVYLEMAGVIAPAYSYFAEYRFRFVLEKQAIL
ARFNPERRQFLEQVFACAPQARTWCTMDFEALWQGYQGERQRAATALDYLQQQGWIELES
KQMTEVYRVLSQQIDTATLAEELHGLFEKKEQSELARLQALLAFFTSTTCLSHELARYFA
DDAAPERCGHCSICRGEIAVLPPIASPGLPNEHGLRAWCDPLIALCHQRHPRILTRFLCG
IATPLTTRLKARDLAGFGQLADHPFAEVLAAVSALYPAES
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgatcacctctttattgacccgacacttcggctttgatcgcttgcggcccgggcaggaa
gcggtgatcagtcgtctgctggccggcaagagcgccgcagccatcttcccgactggcgcg
gggaaatccctctgctatcaattgcccgccctcgcactgccccacctgaccctggtcatc
tctcccctgctggccctgatgcacgatcagctcgcctttctgcgcagcaaggggatcgcc
gccgccactctggactccagtcagacagcggaagagagcaggcgcgtgatgcagcaggcc
agcgatggccagctcaaaatcctgatgatctcggtggagcgcctcaaaaatgagcgcttt
cgccgcttcatcgcccacatccccctgtcactgctggtagtggacgaggcccactgcatc
tcggagtggggccacaactttcgccccgactacctcaagctgccggatcatcgccgtgaa
ctggccattccccaggtgctgttgctgaccgccaccgccaccccggccgtcatggcggac
atgcaggcaaaatttgccatcgaccgggacgatctggtggtcaccggtttctacagaccc
aatctggatctggccgtcctcccgctggccggcactgcccgcgatacctggctgcgcgag
gagctgcagcgggatccggccgcccccaccatcgtctacgtgactctgcaacacagcgca
gagcagtgcgccgcgcagctacaggccagcggcatccgggcatgcgcctaccatgcgggg
ctcgatcccgccctgcgcagccagatccagcacgacttcatggctggcagactcgactgc
atcgtggccaccatcgcctttggcatgggcatcgacaaggccgacattcgccgggtcatt
cactacgacctccccaagtccatcgagaactacagccaggagataggccgcgccggacgt
gacgggcttccctcccgctgcaccgtgctggcgagccgcgcccagttgccggtactggaa
aacttcgtctatggggatacgccggacagggacgccatcgcgcacttgctcgatatcgtg
cgccagagcggcaccgagtgggaattcagcctgctgcgcctctccaacgagaccaacatt
cgccaactgcccctcaagaccctgctggtctatctggagatggcaggggtcattgcaccg
gcctacagctactttgccgagtaccgtttcaggttcgtactggaaaaacaggcgatcctc
gctcgtttcaatcccgaacgccgccagttcctggagcaggtctttgcctgcgccccccag
gcgcgcacctggtgcaccatggacttcgaagcgctgtggcagggataccagggggaacgc
cagcgcgccgcgacggcgctggactacctgcagcagcagggttggatcgagcttgaaagc
aagcagatgaccgaggtctatcgggtgctgagccagcaaatcgataccgcgaccctggct
gaagagctgcatggattgtttgaaaagaaagagcagagcgagctggcccgccttcaggcg
ctgctggcctttttcacctcgaccacctgcctcagccatgagcttgcccgctattttgcc
gacgacgcggcccccgagcggtgcgggcactgttccatctgccggggagagatcgccgtg
ttgccgccgattgcatcaccgggcttgcccaacgagcacggtttgcgcgcctggtgcgat
ccgctgatcgccctgtgccatcagcgccatcccaggatcctgacccgtttcctgtgtggc
atcgccaccccgctgacgacccgtctcaaggccagggatctggccggttttggccagttg
gcggaccatcccttcgccgaggtgctggcagcggtgtcagccctctatcccgccgaatcc
tga
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