Aeromonas sp. ASNIH3: C2U39_18225
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Entry
C2U39_18225 CDS
T05427
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aea
Aeromonas sp. ASNIH3
Pathway
aea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U39_18225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aea03019
]
C2U39_18225
Enzymes [BR:
aea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2U39_18225
Messenger RNA biogenesis [BR:
aea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2U39_18225
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AUV13921
LinkDB
All DBs
Position
3902282..3903535
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AA seq
417 aa
AA seq
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MSIASFAELALSPRLQQTLTELGYAAPTPVQASAIPLILAGRDLMAGAQTGTGKTAAFVL
PLLEQLLQHPTSDGPRPIRALVLVPTRELAVQVAESVTRYARGTDLTSTLVYGGVSIAAQ
VEALNAGVDILIATPGRLLDHLRQGALSLAALSHLVFDEADRMLDMGFMDEIKALLKQIP
ADRQTLLFSATCDDNLFALSRVLLRDPELIEVAARNTTAAEVEQRVYAVDSDRKVALVQH
MLTVKGWAPALIFSRTRQGADKLAQQLGKGGINALAFHGDLSQSAREKVLLAFRAGTLQA
LVATDVAARGLDISDLNYVINLEFPHQPEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLE
KVEAVLDTRLPQQWFPGFEPDLTRFDPEPRRASKGAQKQKARKQALAGNKGGKGRKS
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtccattgcctccttcgccgaactggccctctccccccgcttgcagcaaaccctgacc
gagctcggctacgccgcccccaccccggtgcaggccagcgccatccccctgatcctcgcg
gggcgggatctgatggcgggcgcccagaccggcaccggcaagaccgccgccttcgtgctg
ccactgctggagcagttgctgcaacacccgacgagcgatggccctcgccccattcgcgcc
ctggtgctggtgccgacccgcgagctggcggtgcaggttgccgagagcgtcacacgctac
gccagaggcaccgacctcaccagcacgctggtctacggcggggtgagcatcgccgcacag
gtggaggcgctgaacgccggggtggatatcctcatcgccaccccgggccgcctgctcgat
cacctgcgccagggggcgctgagcctcgcagccctgagccatctggtgtttgacgaggcg
gacaggatgctcgacatgggctttatggacgagatcaaggcgctgctaaagcaaatcccg
gcggatcgccagaccctgctgttttcggccacctgcgatgacaacctgtttgccctgagc
cgggtgctcttgcgcgaccctgagcttatcgaggttgccgcccgcaacaccacggcggcc
gaggtggagcagcgggtctatgcggtggacagcgatcgcaaggtggcgctggtccaacac
atgctgaccgtgaagggctgggcaccggcgctcatcttcagccgcacccgccagggggct
gacaagctggcccagcagctcggcaaggggggcatcaatgcgctggccttccacggggat
ctgtcacagagcgcgcgggagaaggtgctgctggcgtttcgcgccggcaccctgcaggcc
ctggtggccaccgacgtggcggcccgcgggctggatatcagcgatctcaactatgtgatc
aacctggagtttccccatcagcctgaggactacgtgcaccgcatcgggcgcaccggccgc
gccggcaacaaggggctcgccatcacactgttcagccccgaagacgcccccctgctggaa
aaagtcgaagccgtgctcgatacccggctgccccagcagtggttcccaggctttgagccg
gatctgacccgtttcgaccccgagccgcgccgcgccagcaagggcgcccagaagcagaag
gccagaaagcaggccctcgcaggcaacaagggcggcaagggacgaaaatcctga
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