Aeromonas sp. ASNIH3: C2U39_21050
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Entry
C2U39_21050 CDS
T05427
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
aea
Aeromonas sp. ASNIH3
Pathway
aea03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C2U39_21050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aea03400
]
C2U39_21050
Enzymes [BR:
aea01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C2U39_21050
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C2U39_21050
DNA repair and recombination proteins [BR:
aea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C2U39_21050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Ribosomal_S13
NFACT_N
DmmA-like_C
Motif
Other DBs
NCBI-ProteinID:
AUV14400
LinkDB
All DBs
Position
complement(4477551..4478363)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVEVSRQGISPWLTGIKVTRVVVRDGRLRWPVPGEIQELVDLVIHRVSRRAKYLL
LETDFGTAILHLGMSGSLRVLDIGTPAEKHDHVDIELANGKLLRLNDPRRFGALLWTREP
AEAHALLAKLGPEPLTDAFHADYLRERARGRSTAIKQFLMDNHVVVGVGNIYANEALYAA
GIHPRRAAGNISAERLGTLVSEIKRVLAEAIRQGGTTLKDFTSADGKPGYFVQQLQVYGR
GGQPCFHCHTLLTEVKMGQRTTVFCSHCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccggaagtcgaagtcagccgccagggcatctccccctggcttaccggc
atcaaggtgacccgcgtggtggtgcgggacggccgcctgcgctggcccgtgcccggcgag
atccaggagctggtggatctcgtcatccaccgcgtcagccgccgcgccaagtacctgctg
ctggagaccgacttcggcaccgccatcctgcatctcgggatgtccggcagcctgcgggtg
ctggacatcggcaccccggccgagaagcacgatcacgtggatatcgagctggccaacggc
aagctgctgcggctcaacgatccgcgccgttttggtgccctgctgtggacccgcgaaccg
gccgaggcccatgccctgctcgccaagctggggccggaacccctcaccgacgccttccat
gccgattacctgcgggagcgggcgagggggcgcagcaccgccatcaagcagttcctgatg
gacaaccacgtggtggtcggggtgggcaacatctacgccaacgaggcgctctatgccgcc
ggcattcatcccaggcgggcggcaggcaacatcagcgccgagcggctgggcaccctggtg
agcgagatcaagcgggtgttggccgaggccattcgccaggggggcaccaccctcaaggat
ttcaccagcgccgacggcaagccgggctatttcgtccagcagctgcaggtttacggccgt
ggcggccagccctgtttccactgccacaccctgctcaccgaggtgaagatgggccagcga
accacggtgttctgctcccactgccaacgctga
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