Aeromicrobium sp. A1-2: C6I20_01360
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Entry
C6I20_01360 CDS
T05642
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aeb
Aeromicrobium sp. A1-2
Pathway
aeb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aeb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C6I20_01360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aeb03021
]
C6I20_01360
03400 DNA repair and recombination proteins [BR:
aeb03400
]
C6I20_01360
Enzymes [BR:
aeb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C6I20_01360
Transcription machinery [BR:
aeb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C6I20_01360
DNA repair and recombination proteins [BR:
aeb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C6I20_01360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
XS
Motif
Other DBs
NCBI-ProteinID:
AXT83969
UniProt:
A0A3B7D9H7
LinkDB
All DBs
Position
283358..287176
Genome browser
AA seq
1272 aa
AA seq
DB search
MLDVNFFDQIRIGLATADDIRGWSFGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITRVDEDARHKDLSSLETKIDLERQQLEGRRDNEVNERMQKLEED
LKALEDEGAKADAKRKVKDAAEREAKQRRDRTQREIDRLDEVWSRFKSLKVQDLEGDELL
YREMTYRFGKYFDGYMGATAIQKRLQDFDLEAEAELLREIIATGKGQKKTRALKRLKVVS
AFLGSSNAPAGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCSAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSTNNILKPSDGRPVTMPTQDMIIGLYFLTLERSGHIGEGR
AFSSVSEAMMAFERHEISLQAHVKIRIEGTTNETTLGRAIFNEALPDDYPFVNHQVGKKE
LGVIVNDLAERYSKVDVANALDNLKDTGFHWGTRSGVTVSIEDVVTPPRKQEILSGYEAQ
AAKVQTQFDRGLITADERRQELIEIWTQATADVTEEMLKGFTEDNPIWMMVDSGARGNMM
QVRQIAGMRGLVANPKGEIIPRPIKANFREGLSVVEYFIATHGARKGLADTALRTADSGY
LTRRLVDVSQDVIIREEDCGTERGLRQVIATKNDEGRAVPDENVETSAYSRTAAADVTDD
KGTVLAAAGSELGDVEIGRLIAAGIEEIKVRTVLTCEAKAGTCAKCYGRSLATGKLVDIG
EAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRVVELFEARQPKGRAPITESAG
RVEIDDSDKTRKLVVTPDDGSEVLEYPVTKRSRLLIADGDHVEVGQQLTHGTPDPQEVLR
ILGVRRAQEHLVDEVQAVYRSQGVAIHDKHIEIIVRQMLRRVTVIEQGASNLIPGDLVDR
AKFEEENRRVVAEGGNPASGRPVLMGITKASLAVESWLSAASFQETTRVLTDAAIHGKSD
ALRGLKENIIIGKLIPAGTGLDRYKNIRVEPTEEARQAAYAVTGYGDYDYGFGAPDSAPV
QLDDFDFTSFEK
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtgaacttcttcgatcaaatccggatcggtctcgcgaccgccgacgacatc
cgcggatggtcgttcggcgaggtcaagaagcctgagacgatcaactaccgcacgctcaag
cccgagcgtgacggactcttctgcgagaagatcttcggtcccacccgggattgggagtgc
tactgcggcaagtacaagcgcgttcgcttcaagggcatcatctgcgagcgttgcggcgtc
gaggtcacgcggtccaaggtgcgccgtgagcgcatgggccacatcgagcttgccgctccc
gtcacgcacatctggtacttcaagggcgtcccgagccggctgggctatctgctcgacctg
gctcccaaggacctcgagaaggtcatctacttcgcggcctacatgatcacgcgggtcgac
gaggatgcgcgtcacaaggatctgtcgagcctcgagaccaagatcgatctggagcgtcag
cagctcgagggacgtcgcgacaacgaggtcaacgagcgcatgcagaagctcgaggaagac
ctcaaggcactcgaggacgagggcgccaaggccgacgccaagcgcaaggtcaaggacgcc
gccgagcgtgaggccaagcagcgtcgcgaccgcacgcagcgcgagatcgatcgcctcgac
gaggtgtggagccgattcaagagcctcaaggtccaggacctcgagggtgacgaactgctc
taccgcgagatgacgtatcgcttcggcaagtacttcgatggctacatgggcgccacggcg
atccagaagcgcctgcaggacttcgacctcgaggccgaggccgagctgctgcgcgagatc
atcgcgaccggcaagggacagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcg
gcattcctcggaagcagcaatgctcccgctggcatggtcctggatgccgtcccggtcatc
ccgccggaactgcgcccgatggtgcagctcgatggtggacgcttcgcgacgagcgacctg
aacgatctctaccgccgcgtgatcaaccgcaacaaccggctcaagcgtctgcttgacctc
ggtgctccggagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgtcgactcg
ctgttcgacaacggccgccgtggtcgtccggtcaccggaccgggcaaccgtccgctcaag
tcgatctcggacatgctcaagggcaagcagggtcgattccgtcagaacctgctcggcaag
cgcgtcgactactccggccgttcggttatcatcgtcggcccgcagctcaagctgcaccag
tgtggtctgcccaagcagatggcactcgagctgttcaagccgttcgtgatgaagcgtctg
gttgatctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgggctcgc
ccggtcgtgtgggacgtcctcgaagaggtcatcaccgagcaccccgtgctgctcaaccgt
gcacccacactgcaccgtctgggcattcaggcgttcgagccgcagctcatcgagggcaag
gccatccagatccacccgctcgtctgctcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgagcgcggaggcgcaggccgaggcccgcgtcctgatgctg
tcgaccaacaacatcctgaagccgtccgacggtcgcccggtcacgatgccgacccaggac
atgatcatcggcttgtacttcttgacgctcgagcgttcgggacacatcggtgagggacgt
gccttcagctcggtctccgaggccatgatggccttcgagcgtcacgagatctcgctgcag
gctcacgtcaagattcgcatcgagggcacgaccaacgagacgaccctgggtcgcgcaatc
ttcaacgaggcgctcccggacgactacccgttcgtcaaccaccaggtcggcaagaaggag
ctcggtgtcatcgtcaacgacctcgccgagcgctactccaaggtcgacgtggccaacgcg
ctcgacaacctcaaggacaccggcttccactggggcacccgctccggcgtgacggtctcg
atcgaggacgtcgtgacgcccccgcgcaagcaggagatcctttccggctacgaggcgcag
gccgccaaggtccagacgcagttcgaccgtggtctgatcactgcggacgagcgtcgtcag
gagctcatcgagatctggacgcaggccacggccgacgtcacggaggagatgctgaagggc
ttcacggaggacaaccccatctggatgatggttgactccggtgctcgcggaaacatgatg
caggtgcgtcagatcgccggcatgcgtggtctggtggccaaccccaagggcgagatcatc
ccgcgccccatcaaggccaacttccgcgagggtctgtcggtggtcgagtacttcatcgcc
acccacggcgcccgcaagggactcgccgacacggctctgcgtacggctgactcgggctac
ctgacgcgtcggcttgtcgacgtcagccaggacgtcatcatccgcgaggaggactgcgga
accgagcgtggactccgtcaggtcatcgcgaccaagaacgacgagggtcgcgcggtcccc
gatgagaacgtcgaaacttcggcgtactcccgcacggcagcagccgatgtcacagacgac
aagggcacggtgctcgcagctgctggcagcgagctcggcgacgtcgagatcggtcgcctc
atcgcggccggcatcgaggagatcaaggtccgtacggtcctgacctgcgaggccaaggcg
ggtacgtgtgccaagtgctacggccgctcgctggcgaccggcaagctcgtcgacatcggt
gaggccgtcggcaccatcgcggcccagtcgatcggtgagcccggcacgcagctgaccatg
cgtaccttccacaccggtggtgtggccggagacgacatcacgcacggtctcccgcgcgtc
gtggagctcttcgaggcacgtcagcccaagggtcgtgcgccgatcactgagtctgctggt
cgggtcgagatcgatgactcggacaagacccgcaagctcgtcgtgacgccggacgatggt
tccgaggtgctggagtaccccgtgaccaagcgttcgcgtctgctgatcgccgatggcgat
cacgtcgaggtcggccagcagctgacgcacggtacgccggatccgcaggaagtcctgcgc
atcctgggtgtgcgtcgcgcgcaggagcacctcgtggacgaggtccaggcggtctaccgc
tcgcagggtgtggccatccacgacaagcacatcgagatcatcgtgcgccagatgctccgt
cgcgtgacggtcatcgagcagggtgcgtcgaacctcatccccggtgacctggtcgatcgg
gccaagttcgaggaggagaaccgacgcgtcgtcgccgagggtggcaaccccgcttcgggt
cgtccggtcctgatgggtatcacgaaggcctcgctggccgtcgagtcgtggctgtcggcc
gcctccttccaggagacgacccgcgtcctgaccgacgcagccatccacggcaagtccgat
gcgctccgtggtctgaaggagaacatcatcatcggcaagctcatcccggcaggtactggt
ctcgaccggtacaagaacatccgggtcgagccgaccgaagaggcccgtcaggccgcctac
gccgtcacaggctacggcgactacgactacggcttcggtgctccggactccgctccggtg
cagctcgatgacttcgacttcacgtcgttcgagaagtag
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