Aeromicrobium sp. A1-2: C6I20_04280
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Entry
C6I20_04280 CDS
T05642
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aeb
Aeromicrobium sp. A1-2
Pathway
aeb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aeb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6I20_04280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aeb03019
]
C6I20_04280
03009 Ribosome biogenesis [BR:
aeb03009
]
C6I20_04280
Enzymes [BR:
aeb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C6I20_04280
Messenger RNA biogenesis [BR:
aeb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C6I20_04280
Ribosome biogenesis [BR:
aeb03009
]
Prokaryotic type
rRNA processing factors
C6I20_04280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF5969
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AXT84489
UniProt:
A0A3B7DAZ5
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All DBs
Position
875832..878447
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AA seq
871 aa
AA seq
DB search
MLDDNDTTGESTTATPSTRRRAAGRPAGPPAAVSFSAPAAPQAKAPASEPEEAPVKKAPA
RKSAAKAQEPAETTERADAPVKKAAAKKSSAAKTAAKAEEPAEEAVPVASTAAMFKAPEP
GLAPARPKPKPEPDADSGRDDDDDDDDDDSDGPKRRRRSRGGRRRRKGDNDGDESTSDGD
DDTEDDGNGGTRRRRRRARAGEGADASPDDPENTVVRVRNGRTAEDEITGVAGSTRLEAK
KQRRREGREAGRRRAPIVSEAEFLARRESVKREMVVRQRDDYTQIAVIEDNVLVEHYVAR
ESQVSIIGNVYLGKVQNVLPSMEAAFVDIGAGRNAVLYAGEVDWTTLGNGKQRKIEDALK
PGQTILVQVSKDPIGQKGARLTSQVSLPGRFLVLVPGGQTSGISRKLPENERARLKTLLK
EVLPDNTGVIVRTAAEGATEEQLTRDVTALSARWEVIEGKVAAGNAPELLYSEPDLMIKV
VRDLFNEDFHGLVVEGDDAWDMIKGYIDHVAPDLAERVKPWQSDDGRDAFTAYRLDEQIH
KALDRKVFLPSGGSLVIDRTEAMTVVDVNTGKYTGSGGNLEETVTKNNLEAAEEVVRQLR
LRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRIGTG
LLESFSVDCDHCHGRGVVIQDAPVEPKRDEQRRGGRGGRGGGGNNGNSGGNQAKSGGGNA
KSGGGNDAPKPAEAPKPAEAPKPAEAPKPADVAKPADAPKPTPETPAKAADSVEQTDRAV
QTPSVASVPQTDISSVTRDEPSVPAKKPARKRGSASKPAGPPPAVEPASSAPKAAVSNPI
QAGTIAAESTSSEPSGNDGDAPVLTSEGQVP
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacgacaacgacaccactggcgaatccaccaccgcgacgccctccacccgccgg
cgagcggccggtcggcccgcagggccacctgccgccgtgagtttctccgccccggccgct
ccgcaggccaaggctccggccagcgagccggaggaagcgccggtcaagaaggcgcccgcc
cgcaagagcgcggcgaaggcgcaggaaccggccgagacgaccgagcgggcagatgcaccg
gttaagaaggctgcggccaagaagtccagcgccgcgaaaaccgccgcgaaggcggaggag
cccgccgaggaggctgtgccggtcgcctcgaccgcggccatgttcaaggctcccgagcca
ggactcgctccggcccggcccaagcccaagcccgagcccgacgccgactccggtcgcgat
gatgatgacgacgacgacgacgacgacagcgacggtccgaagcgtcgtcgccgcagtcgc
ggcggtcgtcgtcgtcgcaagggcgacaacgacggcgacgagtccaccagcgacggtgac
gacgacaccgaggacgatggcaacggcggcacgcgtcgccgtcggcgtcgagcgcgggcc
ggagaaggggccgacgcctcgcccgacgacccggagaacaccgtggtgcgggtccgcaac
ggccgcaccgccgaggacgagatcactggcgtcgccggctcgacccgcctcgaggccaag
aagcagcgccgccgtgagggccgcgaagccggtcgccggcgcgccccgatcgtgtccgag
gccgagttcttggcccgtcgcgagtcggtcaagcgcgaaatggtcgtccgccaacgcgac
gactacacgcagatcgccgtcatcgaggacaacgtcctcgtcgagcactacgtggcccgc
gagtcgcaggtgtcgatcatcggtaacgtctacctgggcaaggtccagaacgtcctgccg
agcatggaggccgccttcgtcgacatcggtgccggccgaaatgccgtcctgtatgccggc
gaggttgactggacgacgctcggcaacggcaagcagcgcaagatcgaggatgcgctcaag
cccggccagacgatcctcgtgcaggtctcgaaagacccgatcggccagaagggcgcccgt
ctcacgagccaggtcagccttcccggccggttcctggtcctcgtgcccggcggccagacc
agcggcatctcgcgcaagctgcccgagaacgagcgcgctcgcctcaagaccctcctcaag
gaggtcctgccggacaacaccggcgtcatcgtgcgcaccgcagcagagggtgcgaccgag
gagcagttgacccgcgacgtcaccgcgctctcggcgcggtgggaggtcatcgagggcaag
gtggcggccggcaacgcccccgagctgctctactccgagcccgatctgatgatcaaggtc
gtgcgtgacctgttcaacgaggacttccacgggcttgttgtcgagggcgacgatgcctgg
gacatgatcaagggctacatcgaccacgtcgccccggatctcgccgagcgggtcaagccg
tggcagagcgatgacggccgggatgccttcacggcgtaccgactggacgagcagatccac
aaggcgctggaccgcaaggtgttcctgccgtccggtggctcgctggtcatcgaccgcacc
gaggccatgacggtcgtcgacgtcaacaccggcaagtacaccggctcgggcggcaacctc
gaggagaccgtcaccaagaacaacctcgaggccgccgaggaggtcgtgcgtcagctccga
ctccgcgacatcggcggcatcatcgtcgtcgacttcatcgacatggtcctcgagagcaac
cgtgacctcgtgcttcgccgcctcgtggagtgcctcggacgtgaccgcacccgccaccag
gtcgccgaggtcacctcgctcggtctggtgcagatgacgcgcaagcgcatcggcacgggg
ctgctcgagtcgttcagcgtcgactgtgaccactgccacggccgtggcgtcgtgatccag
gacgcgccggtcgagcccaagcgggacgagcagcgtcgcggtgggcgcggaggccgtggt
gggggtggcaacaacggcaacagcggcggcaaccaggccaagtccggcggcggcaacgct
aagtccggcggcggcaacgatgcccccaagcctgcagaggcccccaagcctgcagaggcc
cccaagcctgcggaggcccccaagcctgcggacgtcgcgaagcctgcagacgcccccaag
cccaccccggagactcctgcaaaggccgctgacagcgtcgagcagaccgaccgggcagtc
cagacgcccagtgtcgcgtcagtgccgcagaccgacatctcctcggtcacccgggacgaa
ccatccgtcccggccaagaagcccgcccgcaagcgagggtcggcctccaagccggctggc
ccgccgcccgcggtggaacctgcgtcatcggcccccaaggccgctgtcagcaacccgatt
caggccggcacgatcgcggctgaaagtacgagttctgagccttctgggaacgacggggat
gcccccgttttgaccagcgagggtcaggttccgtaa
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