Aeromicrobium sp. A1-2: C6I20_13275
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Entry
C6I20_13275 CDS
T05642
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aeb
Aeromicrobium sp. A1-2
Pathway
aeb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aeb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6I20_13275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aeb03019
]
C6I20_13275
03009 Ribosome biogenesis [BR:
aeb03009
]
C6I20_13275
Enzymes [BR:
aeb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C6I20_13275
Messenger RNA biogenesis [BR:
aeb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C6I20_13275
Ribosome biogenesis [BR:
aeb03009
]
Prokaryotic type
rRNA helicases
C6I20_13275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
Extensin_1
UvrA_inter
AAA_22
CMS1
P-loop_SecA
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AXT86059
LinkDB
All DBs
Position
complement(2719405..2721291)
Genome browser
AA seq
628 aa
AA seq
DB search
MTTEETPSTPTFAELGLVDSLVSRLSSLGYETPTPIQARAIPTLLEGKDVVGLAQTGTGK
TAAFALPILQKIDPSNAKTQAIVLAPTRELALQVCEAITAYAVNIPGVRVLPVYGGQGYG
FQLSGLQKGAHIVVGTPGRVIDHLERGSLDLTALEFLVLDEADEMLNMGFAEDVERILAD
TPEYKQVALFSATMPKQIRSLAKKYLHDPVDIATPKATTSTATVRQRWIQVSHHHKLDAL
TRLLEVETGDGMLVFVRTKSATEELADKLRSRGYSAAALNGDLVQAQRERTVAQLKSGGI
DLIVATDVAARGLDVDRITHVVNYDIPHDTEAYVHRIGRTGRAGRTGEAILFVTPRERRM
LSAIEKVSGRPVEEMSVPSAEEVNERRAGRFANAITSSMGSPQFHAFRTLVEEYVSENEV
SMTDAAAALAVMSQTDKEFFLRPDPPKSVRAPRDDSAPRSKPAGFDRSDRLPSEGSAVYR
VAVGKRHKIGPSMIVGALANEGSLKRSDFGKITIGTEHTLVELPVDLPDAVFEALANTRI
SGKLIDLQLDDGPPIKRTREDRKGSKPYEKKPYAKKPYEKKPYEKKPYEKSSGEKKPYEK
KPYEKKPYEKKSGPGSASGEGTRKPRHK
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgaagaaaccccgtccacgccgacgttcgccgagctcggcctcgtcgactcc
ctcgtcagcagactgtcgtcgctgggatacgagaccccgaccccgatccaggcccgcgcg
atcccgaccctgctggagggcaaggacgtcgtcggcctggcgcagactggcaccggcaag
accgcggcgttcgcgctgccgatcctgcagaagatcgatccctccaacgccaagacgcag
gccatcgtgctcgccccgacccgtgagctcgcgctccaggtctgtgaggcgatcaccgcg
tacgccgtcaacatccccggagtccgggtccttccggtctacggcgggcagggctacggc
ttccagctctcgggcctgcagaagggcgcccacatcgtcgtcggcacccccggccgcgtg
atcgaccacctcgagcgcggcagcctggacctgacggcgctggagttcctggtgctcgac
gaggccgatgagatgctcaacatgggctttgccgaggacgtcgagcgaatcctcgccgac
actccggagtacaagcaggtcgccctgttctccgcaacgatgcccaagcagattcgcagc
ctggccaagaagtacctgcacgacccggtcgacatcgcgacgcccaaggccacgacctcg
accgcgacggtccgccagcgctggatccaggtgtcgcaccaccacaagctcgatgcgctg
acgcgtctgctcgaggtcgagaccggtgacggcatgctcgtgttcgtgcgcaccaagtcg
gcgaccgaggagctggccgacaagctgcgcagccgcggctactccgcggcagccctcaac
ggcgacctcgtgcaggcccagcgtgagcgcaccgtcgcgcagctcaagtccggcgggatc
gacctgatcgtggcgacggatgtcgcggcccgtgggctcgacgtggaccggatcacccat
gtcgtcaactacgacatcccgcacgacaccgaggcctatgtccaccgcatcggccgcaca
ggccgggccgggcgcaccggtgaggcgatcctcttcgtcacaccgcgtgaacgccgcatg
ctgtcggcgatcgagaaggtctccggccgtccggtcgaggagatgtcggtgccctccgcc
gaggaggtcaatgaacgccgtgcgggccgattcgccaacgcaatcacctcgagcatgggc
tcgccgcagttccatgccttccgcacgctcgtcgaggagtacgtcagcgagaacgaggtc
tcaatgaccgatgccgccgccgcgctcgcggtcatgagccagaccgacaaggagttcttc
ctgcggcccgatccgcccaagtcggtccgagccccgcgtgacgattccgccccgcgcagc
aagccggccggcttcgatcgctctgaccgtctgccgtcagaaggttcggcggtgtatcgc
gtcgcggttggcaagcggcacaagatcggcccgtcgatgatcgtcggagcgctcgccaac
gagggaagcctcaagcggtcggacttcggcaagatcacgatcggcaccgagcacaccctg
gtcgagcttccggtcgacctccccgatgcggttttcgaggcgttggccaacacgcgcatc
tccggcaagctcattgacctgcagcttgacgacggcccgccgatcaagcgcacccgcgag
gaccgcaagggcagcaagccgtacgagaagaagccctacgccaaaaagccgtacgagaag
aagccgtacgagaagaagccgtacgagaagagctcaggcgagaagaagccgtacgagaag
aagccctacgagaagaagccctacgagaagaagtccggcccaggctcagcgtcgggtgaa
ggcacccgcaagccccggcacaagtaa
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