Acromyrmex echinatior (Panamanian leafcutter ant): 105145707
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Entry
105145707 CDS
T03917
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
aec
Acromyrmex echinatior (Panamanian leafcutter ant)
Pathway
aec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105145707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aec03019
]
105145707
Enzymes [BR:
aec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105145707
Messenger RNA biogenesis [BR:
aec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105145707
mRNA degradation factors
3'-5' decay
Ski complex
105145707
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
DEXQc_Suv3
MTR4_beta-barrel
ResIII
DUF3067
DUF3516
Motif
Other DBs
NCBI-GeneID:
105145707
NCBI-ProteinID:
XP_011053771
LinkDB
All DBs
Position
Unknown
AA seq
1198 aa
AA seq
DB search
MAELTQLFAGPPPIWPDIRSELREYIECPERLPIHQLDNTQCYWPRKADVLSLLEFDLAP
VNTTLKFDRDPITGKIGEIQEIDLQGAGETARNSMSMTRAPGLLTDGVRGNPSNIPFWPG
GFEEPKVPKSEDMDDIDFEKDLRTLAKGFSSGLEFKSDNCTPINCMRYEVEASILEETEK
LIINNDNINLMAGIHEEGNLLGSWPSIEEPKKESVQAVDNNIPFIDNSILPKETDIPVLK
ISETQTELTKAEWAEQLDVSAPVTDFNKRIPDPAITFSYELDTFQKQAILKLEENSNVFV
AAHTXLSQKHMTRVIYTSPIKALSNQKYRDFKRKFESVGLLTGDLQINQTASCLIMTTEI
LQSMLYCASDVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQNINIVMLSATVPNPII
FADWVGRIKKRKMYVISTLKRPIPLLHYLYTGTDGKTKDDKFLVLDSNSQFLLDGWYKAT
NASDKKKDKTSKDCRRKIQMTPKQEEVLWRAFVSHLQNNDMLPVVVFTLSRKRCDMNAVT
FRNLDLTTAREKHQVHVFFQHNIKHLKGSDRELPQVLMMQELLEKGVGIHHSGILPILRE
IVEMLFQSGVVKLLFATETFAMGVNMPARTVVFDSIRKYDGNNFRTLFPTEYIQMAGRAG
RRGHDTTGTVIVMCRHDVPHFNDLKPMMCGEPQTLESKFKVTYSMLLNLRRVNESVTVEA
MMRKSFKESPLASQEASYNNELRKIERELSNLPPLTEIQKKLSTFYHQAVDYLEDVKFLN
PYLLTSKKAAKSLIGGRVLLISYADHYNKLALLLQVLHHKSSAQYKVLILKDANVSTSET
TDFKTPQIFEKWCEIISLTKKEIFIPSINPSHEVLTLFPWHILKITNCQIKIDCSLVLND
WEKRQISRFKNDPPGQTCQTAVQELTSLSFNASTNVRILQPYIEPSSKNDFQLRIQHKNK
LKANLNDMKCIEIPNFEEQFRPVFERNHLEDKKRQLQLKLSDEGMALYPDYLNMVALLKH
FRYIDNDERVALKGRVALQMGSNELLITELILKNVLTVLQPAEIAALLSALIFQQRTDVE
PQLTPTLANACKIMNEVHAELEHLEQYYQLSTLLPLNFGLVEVVYEWAQAKSFAEIMKMT
DVQEGIIVRCIQQLGETLRDVKNAAVTIGDPILKEKMEEASTAIKRDIVFAASLYTQD
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattgacgcagttatttgctgggcctccacccatttggcctgatattagatca
gaactgcgagaatatattgaatgccctgaacgattacctatacatcaactggacaatacc
caatgttattggccacgtaaagcagatgtcctttccttgctagaatttgatttagctccc
gttaatactacgcttaaatttgaccgtgatccaataacaggcaagattggtgagatacaa
gaaattgatttacaaggtgcaggggaaacggcaagaaattctatgtctatgactcgtgcc
cctggattacttacagatggagttcgaggtaatcctagcaatattccattttggcctggt
ggttttgaagaacctaaagtgcctaaaagtgaagacatggatgatattgactttgagaag
gatttaaggacattagctaaaggatttagctcaggtttagaatttaaaagtgacaattgt
acaccaatcaattgtatgagatacgaagtagaagcttcaatattagaagaaactgaaaag
ttaataatcaataatgataatataaatttaatggctggtatacacgaggagggaaatttg
cttggttcatggccttcaattgaagagccgaaaaaagaaagtgttcaagctgtggataac
aacattccctttatagacaattccattttacctaaagaaacagatatacctgtcttgaaa
atatccgagacacaaacagaacttacaaaggcagaatgggcagaacagctggatgtatcc
gcaccagtaacagattttaacaagagaatacctgatccagcaattacatttagttatgaa
ctagacacttttcaaaagcaagctattcttaaattggaagagaacagcaatgtcttcgtt
gctgcacacactncattgagtcaaaagcatatgacgagagtgatttatacgtcccccata
aaagctctgtcaaatcagaaatatcgtgattttaagagaaaatttgaaagtgttgggtta
ttaacaggtgatttgcaaataaatcaaactgcttcatgtctaatcatgacaacagagatc
ctacaatcaatgttgtattgtgcatccgatgttttacgagatttagagttcgtcatattt
gatgaagtgcattatataaataatgaagataggggtcatgtatgggaagaaatagtcatt
cttttaccacagaatattaatatagtaatgttatctgcgactgtaccaaatccaataata
ttcgcggattgggttggtcgcattaaaaagcgaaaaatgtatgtgattagcactttgaaa
agaccaatacctctgttacattacttgtatactggcactgatggcaagactaaggatgat
aagttcttagttcttgacagcaacagccaatttttattggatggatggtacaaagcgaca
aatgcatccgataaaaagaaagacaaaacatcaaaggactgtaggagaaaaattcagatg
acgccgaaacaagaagaagtattatggagagcatttgtaagccaccttcagaacaatgac
atgttacccgttgttgtatttactctatcgaggaaacgttgtgatatgaatgctgtcacg
ttcagaaatctcgatttaacgaccgcgagagaaaagcatcaagtacatgtatttttccaa
cataacataaaacacctaaagggtagcgacagagaattaccacaagtacttatgatgcaa
gagctcttggaaaagggtgtgggtatacatcacagtgggatattaccaattttgagagag
atcgtagaaatgttatttcaaagtggagttgtcaagttactgttcgcgacagaaactttt
gccatgggagttaacatgccggcgcgcacagtggtgtttgattccatacgaaaatatgac
ggaaacaactttcgtactctatttccaactgaatatatacaaatggctggccgtgctgga
cgacgaggtcacgacactacgggtactgttatagtgatgtgcagacatgacgtgccgcac
tttaatgacttgaaacctatgatgtgcggtgaaccgcagacattggaatcgaaatttaaa
gtcacgtactccatgcttcttaatctgagaagagtgaacgaatccgttaccgttgaagca
atgatgcgcaaatctttcaaggaatcgccgttggcctcgcaagaagcgtcatataacaac
gagttacgaaaaatcgaacgcgaattatcgaatttgccgcctttgaccgaaatccaaaaa
aaactctctacgttctatcaccaagcggtcgattatttagaagatgttaaattcctgaat
ccttatttgctcacctcaaagaaagcagcgaaaagtttaatcgggggcagagttttgtta
atatcgtacgcggatcattacaataaattagctctgttattgcaagttttacatcacaaa
agctctgctcagtacaaagtcttgatacttaaggacgcgaatgtatccacttccgaaact
actgattttaaaactcctcagatattcgagaaatggtgcgagattattagcctaacgaaa
aaggagatatttataccaagtattaatccgtcacacgaagttttgactctgtttccatgg
catatattaaagataactaattgtcagataaaaattgattgctctttagtattgaatgat
tgggaaaagaggcaaatctcacgattcaaaaatgatccaccgggacaaacgtgtcagaca
gcggttcaagaattgacttctttatcatttaatgcttctactaacgttcgcattctacaa
ccatatatcgagccctcatcgaaaaatgattttcaattaagaatacaacataaaaacaaa
ttaaaagctaatctgaacgacatgaaatgtatagaaataccaaactttgaagaacaattt
agacctgtatttgaacgaaatcatcttgaagataaaaagcgacagcttcaacttaaactt
agtgatgaaggaatggcgttatatccggattatctgaatatggtagcacttctcaaacac
tttaggtacatagataatgatgaaagagtcgccctcaaaggaagagtcgcgctacaaatg
ggtagtaacgaactgctgataacagaattaattttaaaaaatgtgttaactgttctacaa
ccggcagaaatagcagcgttactatcagcactgatcttccaacaacgcacggatgttgag
cctcaactcacaccaactcttgctaacgcttgcaagataatgaacgaggtgcacgcggaa
ttggaacatctagaacaatactatcaactgtcgacattactaccactgaatttcggctta
gtggaagttgtctacgaatgggcacaggccaaatcattcgccgagatcatgaaaatgact
gatgtccaagaaggaattatagttcgttgcatacaacaattaggcgaaacattacgagat
gttaaaaatgcggctgtaaccataggtgacccgattttaaaagagaagatggaggaagcg
tcaaccgcgatcaaacgtgacatagtgtttgctgcgtctttatacacccaagactga
DBGET
integrated database retrieval system
