Acromyrmex echinatior (Panamanian leafcutter ant): 105146440
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Entry
105146440 CDS
T03917
Name
(RefSeq) uncharacterized protein LOC105146440 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aec
Acromyrmex echinatior (Panamanian leafcutter ant)
Pathway
aec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aec00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105146440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aec03021
]
105146440
03019 Messenger RNA biogenesis [BR:
aec03019
]
105146440
Transcription machinery [BR:
aec03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105146440
Messenger RNA biogenesis [BR:
aec03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105146440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
HEAT_MROH2B_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
105146440
NCBI-ProteinID:
XP_011055004
LinkDB
All DBs
Position
Unknown
AA seq
1893 aa
AA seq
DB search
MFSSTKSKEVADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVETHLQKVRSD
IKLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPP
NKLFSLDVRVQSIDPAWPITAPPTSIPSGSIHVNPRFLSMPQQATTSIVPPVKLPPGEPV
TTTEAVMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGSLKTEVVVSTA
HVAPTTETTTQAKPVAPVVPNQTSKQVAKQFPAAAASLLKNVGTNSGPRIAPASSIAVAS
AKPVSRDPRLKPISIIQDVIVPTIDPRQRPGTTSPKEARSESQTQQVANTIVTSNQLKQQ
PSKSAVTINKLPANPGAGPDNTTLLNVMNNNNSDNNSNNKNFNSNINKDATSHRISQKKD
PRLNINSSANLNSNNSKNIQNLSVCSNNSSSVLSMGNRGSGGSDINKSKDSKSSNSRGSS
SLADKSSTSSKSSHRKLGNKSRSKQPQICPNKIPKVDRDSSPIRSKSREKDSGDSSPSSR
TSPQSFQASKSRKKNTKSRKRSPSPPYRIPRRNDAKSSSSLNNSGGVTEEEQSGSLIVSP
PHPPAFKEIRPNARQRNYVRRNKDDSLSPERSPVNAGNTQIAAEPTLESSSKDEDLRAPL
SLPGVAVSIPEKKEDLDLRVLPPVNTNKRRSEECVEATPPKKTKAEKFDALFGNEDVDLR
TLTHPNAGRPPTPPPPVISGEDGKDGWAKLKTPTKNDRDKQINNTDDKRDRDRNRDRLGR
LRLYNKLPDDPKERRRTLSNEEQDSRPGRRGRENDKPERNDDRNIEIIMKQAAEQLNQGS
ITKMQYNTLIQEVLHMSEDRKLRAAQRKEKEAGTVIWEKGINMDMSGPGDRAATFSPSND
KEMIRNKEHPMPRNPNGPRWQNQPWQQPWAHPPGPPYGGPQAHFNSDMRPVGPWQNPRHF
GPMRPDYQYHSGFNHNMGPNPRLGPGMMGPIGPNGPIMSNLLPNGPMGPMGPMPNPPMPM
GCHPAMMMNNGPMPNLMTNMPPLTSGRNVSPNTSSKYDLEDNDHSYNAVLKNPGSHSREL
PPPDSKLLADIARDTMKSINIDNIPREIRYYGQTGVVFMNWDDPREIGFQDGIRRILIDE
KDTITCAFNDQYKEFMYEGEVHRIKLGAPTRELYVDDCWYECYFGGMPITIELGGKKVSV
KLEGPPPQVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEIEGKPHTLEFTDAL
QTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRAGHVKITGMRGEGPIESPPP
AAPLLTQKPKVDAAPAPSQLPTVENESTSQDGIDFTSTSKPDLQLDILSSVLPSAMAPSS
GLSYQAEPVENPPAPAPTLPLNMSELFQRLVETGIVPNLTEQKKQEEEEKKESVITPVTF
DKPETLKIKQPAISTALYSGMQCSSCGARFAPELATRYSHHLDWHFRQNRRERDSARKAH
SRPWYYDVSDWIQFEEIEDLEDRAQSWFETEKQTAETEGMATDDSPQETLQPSVPTGSDE
DSRCQVCHDAFEQFYNEEKEEWHLRPAVNYEDKNYHPLCLEDYKEKSSARALEKSALALE
ETVSEMEENKIECSEETPVDETKQEESDIEMSKKEQLESTENLNQVEVNMQQLLDSIVAS
EKKEEAIDEENSEIPQDTEEKTENVESVNEESTEAALEGAEQDASTVNKEDESPGEGVTI
PFENIKIKEEPLDDVDEQVDSEVFDFANVEIKEEPMELEPDPEQIVNESSTVDTTYAAVK
SSIDGNVELDSTPPAIPAAPSRIKINITKPLNINKEPEENKEKEKIAVETSAEEKAEQPL
VAASIKPSLLGRKLSILPPVEKGQELSGLCSIM
NT seq
5682 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgtcgacaaagtccaaagaagttgcagatgagtacatctcatctctgtctgat
cttactattaacagtaagccgcttatcaacatgctcaccatgctggctgaagataatatc
gaacatgcaccagcgatagtgcaagctgtcgagactcatctacaaaaggtgagaagtgac
atcaagttaccggtactctatctcatcgactcgattgtcaagaatgtgaatggagactat
ttgaatctcttcacgcagaacatagtaaacacattctgtggggtgtttgagaaggttgat
gagaatacaagagctagcatgtggaagttgcggcaaacgtggaatgatgtatttccacca
aataagttattttcattagatgtacgggtgcaaagtatcgatcctgcatggccaatcact
gccccacctactagcattccttcaggatctatacatgttaatccaagatttctttcaatg
cctcaacaagccacaacgtcaatcgttccgcccgttaaattgccaccaggagaaccagta
acaacaacagaagcagtcatgagagaacagctgctgaagaagcagcgagaattgttagaa
ttacaaaagaaaaaaatcgagttagagttgttgcaagctaaagcaagtttagagcaacag
cagaggcaacttgacaaacaagctggaagcttgaaaacggaagtggttgtgtccactgca
catgttgcgccaactacggagacaacaacgcaagcgaaacctgtcgcacctgtagtgcca
aatcaaacttcaaaacaagtagcaaaacaatttccagcagcagcagcgtcacttttgaag
aacgtaggaacaaacagtggtccacgaattgcaccagccagtagtatagcagttgcatca
gcgaagccagtctcgcgagatccacgtttgaagcccatttctattattcaggatgtgata
gtgccaacaatagatccacgacaacgaccgggtacgaccagtccgaaagaagcgcggagc
gaaagtcaaacgcagcaagtggcaaatacaattgtaacttcaaaccaattaaaacaacaa
ccttcgaaatcggctgtaactatcaacaagcttccggccaatcccggcgccggacctgat
aatacaacgttattaaacgttatgaataacaataattctgataataatagcaataataaa
aattttaatagtaatataaataaagatgctacctcgcatcgcataagtcaaaagaaagat
cctagattaaatattaatagtagtgctaacctaaacagtaacaactccaagaacattcag
aatttatcggtttgcagtaataactcgtcttcagtattatcaatgggaaatcgaggaagt
ggaggtagtgacatcaacaagtcaaaagattcgaagagctcaaattcgcgtggctcttct
tctttggctgacaagtcttccacttcctccaaatcttcgcataggaaattaggcaataag
tcgcgatctaaacagcctcagatatgtccgaataagattccgaaagtcgacagagattcg
agtccgattagatcaaaatctcgtgaaaaagacagcggagacagttcaccgtcctcacgt
acctctccacaatccttccaagcctctaaaagccgtaagaagaacacaaaatcgagaaag
cgtagtccaagtcctccgtatagaatccccaggcgtaacgacgcgaaatcgagctcgagc
ttgaataattccggtggtgttactgaggaggagcaatctggttcattaatagtatctcct
cctcatccacccgcattcaaagagatcagaccgaacgctagacagagaaattatgtaaga
cgaaataaagacgacagtcttagtccggaacgttctccagtcaatgctggaaatactcaa
atcgcagctgagccaacattggaatcttctagcaaagacgaagatctcagggcaccatta
tctctacctggagttgctgtttctatacctgaaaagaaagaagatttagatctacgagta
ttaccacctgttaacactaacaaaagacgcagtgaggaatgtgtcgaagcgaccccaccg
aagaaaactaaggctgaaaagtttgacgcattatttggtaatgaagacgtggatttgcgc
actttgacgcatcctaatgccggtcgacctccaacgcctccaccgcctgtgatttccggg
gaggatgggaaagatggttgggcgaaattaaagactcccacgaagaatgatagagataag
caaattaataatactgatgataagcgcgaccgagatcgtaacagagataggttggggcgt
ctcagactctataataaacttccggacgatcctaaagagagaagaagaacgctatcgaac
gaggaacaggattccagaccaggacgcagaggccgggagaacgataaacctgaaagaaat
gatgatagaaatattgagataataatgaagcaagctgccgaacagttgaatcagggatcg
attacgaaaatgcagtacaataccttgatacaagaagtgttacacatgagcgaagaccgg
aaattgcgagctgcacagcgtaaggagaaagaggctggcacagtgatatgggaaaagggt
attaatatggacatgtctggtcccggagatcgcgctgcgacgttcagcccgtccaatgat
aaggaaatgatacgaaacaaggaacacccaatgccacgaaatccgaatggtccaagatgg
cagaatcagccgtggcaacaaccttgggcgcatccaccgggaccaccatacggtgggccg
caggctcacttcaattcggacatgagacctgtcggtccttggcagaatccgcgacatttc
gggccaatgcgaccggattaccagtatcatagcggttttaatcacaatatgggccctaac
ccgcgcttaggacctggtatgatgggtccgatagggccaaatggaccgatcatgtcgaat
cttttaccgaatggtccaatgggaccaatgggacctatgccaaatcctcctatgccgatg
ggatgtcatcctgcgatgatgatgaataacggaccaatgcctaatcttatgacgaatatg
ccaccattaacgtctggtagaaacgtatcaccgaacacatccagcaagtatgatcttgag
gataatgatcacagttataacgcagtgttaaaaaatcccggctcgcatagtcgcgaattg
ccgccgccggattcaaaactgttggctgacatcgcgagagacactatgaagtctataaat
attgacaatataccgcgggagattcgttattacggacaaaccggtgtagtgttcatgaac
tgggatgatccacgggaaatcggtttccaggacggtataagaagaatattgattgacgag
aaagacactataacttgtgcatttaatgaccaatataaggagtttatgtatgaaggagaa
gtacatagaatcaaacttggagcacctactcgagaattgtatgtcgacgattgctggtat
gaatgttactttggaggtatgccaataacaatcgaactcggcggcaagaaagtcagtgta
aagttggagggtcctcctccacaagtcaaaatcggcactgtaaagcgaacggatctcgtg
gttgcgaaaattaatcttattatcaacgcgcgaaatatggtaccagtatttttagacgca
aaaccacagatattcgaaatcgagggaaagcctcatactctagaatttacagatgcattg
cagacagttctgctaaatggacgaccatttaaagtcgaatttggagggttacctaaacct
attattgttagagacaagaagcatttcatcagattttcggtattgcccagaggagtgcgt
gctggacatgttaaaattaccggaatgagaggtgaaggtcccatcgaatcaccgccaccg
gcggcacctttgctgactcaaaaaccgaaagtagacgctgctcctgcgccaagtcaattg
cccactgtagaaaatgaatccacgtcgcaagatggtatagattttacttctacttccaaa
ccagacttgcaattagatatcttatcatcagttttgccatcagcgatggcgccgtcatct
ggtttgtcatatcaagccgaacctgtagaaaatccgccagcaccagcaccgacgttgcca
ctgaacatgagcgaattattccaaagattggttgagactggtattgttccaaatctcaca
gaacaaaagaaacaagaggaagaagagaagaaagaatctgtgattactccagtcaccttc
gataaaccggaaactcttaagattaaacaaccagcaatttcaacagcattgtacagtggt
atgcaatgtagttcttgtggtgctagattcgcacctgagttagctactcggtacagccac
catctggattggcactttagacagaataggcgtgaacgtgactctgcgagaaaagcgcat
tctcgaccatggtattatgacgtcagcgattggatacagttcgaggaaatcgaagatttg
gaggacagagcacaaagctggtttgagactgaaaaacaaacagcggaaacggaaggtatg
gctactgatgattcgcctcaggaaacattgcagcccagcgtaccaactggcagcgatgag
gattcgcgatgccaagtatgccatgacgcatttgagcaattctataatgaggaaaaggag
gaatggcatttgagaccagcggttaattatgaggacaagaattaccatccgctctgttta
gaagattacaaggaaaaaagttcagcgagagcattagagaagtcagctttggcgcttgaa
gagaccgtttcagaaatggaagaaaataaaatagaatgttccgaagaaacgcccgtagat
gaaactaagcaggaagagtccgacatagaaatgtcgaaaaaagaacaacttgagtctacg
gagaatttgaatcaagtagaagtgaacatgcagcaactcttagactctattgttgcatca
gagaaaaaagaagaggctattgatgaggaaaattccgaaattccgcaggatacggaagaa
aaaacagaaaatgtagaaagcgtcaacgaagagagtacagaagctgccttagaaggcgcc
gagcaagacgcgtctacggtaaataaagaagacgaatctccaggcgaaggtgtaacaata
ccttttgagaatattaaaattaaagaggaaccactagatgatgttgatgaacaagtcgac
agcgaagtgtttgatttcgccaacgtggaaatcaaagaggaacctatggagcttgaacca
gatcccgaacaaattgtaaatgaatcaagcacggtcgatacaacatatgccgcagtgaaa
agttccatcgatggaaacgtggagttggactccacaccaccagctattcccgcggctcca
tcgcgaattaagattaacattactaaaccattgaacattaacaaagagccagaggaaaat
aaagagaaggagaaaatagcagttgaaacatcagcggaggaaaaggcagaacagccatta
gtggcagcttctattaagccaagtctactgggtaggaaattatcgattttaccccctgta
gaaaaagggcaggaattatcgggactttgttctattatgtaa
DBGET
integrated database retrieval system
