Acromyrmex echinatior (Panamanian leafcutter ant): 105146859
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Entry
105146859 CDS
T03917
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
aec
Acromyrmex echinatior (Panamanian leafcutter ant)
Pathway
aec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aec00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105146859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aec03021
]
105146859
03019 Messenger RNA biogenesis [BR:
aec03019
]
105146859
Transcription machinery [BR:
aec03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105146859
Messenger RNA biogenesis [BR:
aec03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105146859
U7-dependent histone pre-mRNA processing factors
105146859
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Atrophin-1
SecD-TM1
Motif
Other DBs
NCBI-GeneID:
105146859
NCBI-ProteinID:
XP_011055745
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MDPRLHRRSEAEKGPSDLIVEWLNEASISIAEDIKITNICKVQELLLNKEPHLLDSYLND
ILQFSVDRSSEVRKTITGFIEESGIKYPEVIPRTVQILLRLASDETSVVAKRALRASGRI
LRAALKWIASATVVTTDMELAWTQLSALKVQIINMIDSDNDGIRTQAVKFLEGVILIQTY
PDPDSPKKPDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMGS
LALIAKMRPQFMSNVIQALQRLQHDLPPTLSDSQVTSVQKQLKLTLLGLMKHPASIEYAS
TIAKQLTQLGAKEQEIIKAYPKPEDVRRIKKRQQEIAATAAKRVKVEVIIDEAEVATVPT
PKLPDLIELSESFIAERLSVEIATDLVMDSMAWVPDTMTTIFQREYQPTATTDINIQRQT
IAKLLATQIKQTKAKKNKRDKEEDAVMEDLIKNPTISVAEAKRERKREKDREKEKEAKAS
LEAHEKSLAKPRNRMKALKLVEVTKPLPKEIKERMLLMAVNRILLSEKTAVFGGVATIRS
KILTTLAATFNPYIKEAVLRYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLCTKPQEA
PHQAYNFLLCTLVSAIDLIQGKDRDALLSRLYLEAPLITEDAVEALKMVSSDETRGLAPL
QLLKEMVVRRPTKQLVFLNVLLCHTGHENNTIREAAIQLVCQLYSRAELSKLIEEYAVLY
LGFLRLHNPPEIVFGQDRGRPQIESLWTESTTRACLGLYLALLSEHQDLIHELARVYTSM
GADVKRIVLRLVEGPVRSLGMGSPQLLALVENCPKGSETLVTRIIHILTEKSAPSAELVA
RVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGTHNNDSGV
PHTSPITPAELLIALHSIDPSKAELKTVIKATSLCFAEKQAYTQETVAVVMQHLMEMTPL
PTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTQPQSFAVIL
QLPPAQLAEALRMASNLRAPLLAHVEAFAENQKAHIPQSIMDVIQGKVPCDMLDEFDIAP
RGDYSNDQKPDTMEIDLSEPAPPGLD
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggatccacgtttgcatagaagatccgaggctgaaaagggaccgagcgatttgattgtt
gagtggttaaatgaggcttctataagcatcgctgaggacattaaaatcacaaacatatgt
aaagtacaggaacttttattgaataaggaaccacatctgttagacagttacttaaatgac
attctacaattctctgtagatagaagctctgaagttagaaaaaccattacaggatttatc
gaagaatctggaataaaatatccagaggtaatccctcgtacagttcaaatacttcttaga
ttagcgtctgatgaaacatcggttgtagctaaacgtgctcttagagctagtggcagaatt
ctcagagctgctctcaaatggatcgctagtgctactgttgttacgacagatatggaatta
gcatggacacagctaagtgctcttaaagttcaaattattaatatgattgacagtgacaat
gacggaataagaacacaagctgtaaagtttcttgagggtgttattttaatacagacatat
ccagatcccgatagtccaaagaagcccgatgatttctctctcgaggatattccgttaaca
ttgaaaatagctcgtagacgaaaattggaggaagaagcaaatcacgttatggatttgttg
attaaatttcatggatctccacatgttagcagcgtcaatttaatgacatgtatgggatct
ttggcgttaattgccaaaatgaggccacagtttatgtcaaatgtaattcaagcattacaa
aggttgcaacatgatctaccaccaacactgtctgattctcaagtaaccagtgtacagaag
caattaaaactcacacttcttggattgatgaaacatcctgctagtatagagtatgcctca
actattgctaaacagttgactcaacttggagcaaaagagcaagaaattattaaagcttat
ccaaaaccagaagatgtccgtcggataaaaaaacgtcaacaggagatagctgctactgct
gcgaaacgagtaaaagttgaagtgataatagatgaagcagaagtggctactgttcctacg
cctaaattaccagacttaattgaactttctgaaagttttattgccgaaagactcagtgta
gaaattgcaacggatttggtaatggatagtatggcatgggttccggatactatgactaca
attttccaaagggaatatcaacccacagcaactactgatattaatatacaacgtcaaaca
attgctaaacttctagcaacacaaattaaacagactaaagcaaaaaagaacaaaagagat
aaggaagaagatgccgtaatggaagacttaattaaaaatcccacaattagtgtagctgag
gcaaagcgggagcgtaaacgtgaaaaagatcgggaaaaagagaaagaagcaaaagcatca
ttagaggctcatgagaaatcacttgcaaaacccagaaatcgtatgaaagcgttgaaatta
gtcgaagtgacaaaaccacttccgaaggaaattaaagaacggatgttattgatggcagtc
aataggatattactttcagaaaaaactgcagtttttggtggtgtagctactataagatcc
aagattctgactacgctagcagccactttcaatccttacattaaagaagctgttttacgt
tatattactgatgacatgcgaaatcgattagatttagcattaggttggctatatgaagaa
tatgcattgctacaaggatttcaaaggcggactacgttatgtacaaaaccacaagaagct
cctcatcaggcatataatttcttattgtgcactttagtttcagctattgatttgattcag
ggcaaagatcgtgatgctttgttatccagactttatttggaagcaccattaataacagaa
gatgctgtagaggctttaaaaatggtatcatctgacgaaactagaggtcttgcaccattg
caacttctgaaagaaatggtagtgcgtagaccaactaaacaactggtatttttaaatgtc
ttattgtgccatactggacatgaaaacaatacaatacgagaagctgcaatacaattagtt
tgtcagttatacagccgagcagagttaagtaaactaatcgaggaatatgcagtattatat
ttaggctttttacgccttcataatcccccggagattgttttcggacaagatagaggcaga
ccgcaaatcgagagtctgtggaccgaatcaactacacgtgcctgcttaggattgtatctt
gctctcctcagtgaacatcaagatctgattcacgaattagctagagtatatacgtcaatg
ggagcagatgtgaaacgtattgtattaagactggtagaaggaccagtgagatctttaggt
atgggtagtccacaactcctcgcacttgttgaaaactgtccaaaaggatctgaaacttta
gtcacaaggatcatacatattcttacagaaaaatctgccccaagcgcagagttagtagcc
agagtacgcgagttatatcagactagagtttccgatgtcagatttttaatacctgtcctg
aatggactcacaaagaaagaagtaatcgccgcattaccaaaattaatcaaattaaatcct
attgtcgtaaaagaggtatttaacaggttacttgggacacacaataatgacagtggagtt
cctcatacatcgcctattactcctgcagaattattgatagctctacatagcatagatcca
agcaaggctgaattaaaaacagtcattaaagcaacatctctttgtttcgctgagaaacaa
gcgtacacgcaggaaacagtcgccgttgtgatgcaacatcttatggaaatgacaccttta
ccgacattattaatgcgtacagtcatacaaagcttagccctttatcccaggttaagtgga
tttgttatgaacatacttcaacgactgattctgaaacaagtgtggaaacagccgaaagtg
tgggaaggtttcgtgaagtgctgcgaacgcacgcagccacaaagtttcgccgttatttta
caattaccaccggcacagttggcagaggctcttcggatggcgagcaatttacgtgctcct
ttgctggcccatgttgaagcttttgccgagaatcagaaagcacacattccgcaatcaata
atggatgttatacagggtaaagtgccctgtgatatgctcgatgagtttgatattgcacca
cgtggtgattattcgaatgatcaaaaaccagatacaatggaaattgatctttcggaacca
gcccctcccggtttagattag
DBGET
integrated database retrieval system
