Acromyrmex echinatior (Panamanian leafcutter ant): 105150890
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Entry
105150890 CDS
T03917
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
aec
Acromyrmex echinatior (Panamanian leafcutter ant)
Pathway
aec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105150890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aec03019
]
105150890
Enzymes [BR:
aec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105150890
Messenger RNA biogenesis [BR:
aec03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105150890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
105150890
NCBI-ProteinID:
XP_011062566
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
MIEVTNQNFNKVYPHLERTLKNANFIAIDGEFTGIESGDVRNSLFDSIYERYEKNRSHIQ
PYIIIQFGISAFQRVHDENKYIAEAFNFFLLPRTIPSKNRHFLWQIESLEFLTMYGFNFN
ELAYNGISYLDQTDKTLLEQQIQENTLFNNVEQSISYKEEDNFKNTVTQIFEWLKTASDE
VDSIKVKSPTPTFQYFMHKELRKRFSNIWTFSGNNVITVIKVLPESRQILEQEEGFILEN
TLLESYVGFSKVFNFLITLKKPIIAHNAFLDFMFIHQQFYKPLPQKYIDFKNNIHQLFPT
IYDTKFLSYELRKILQTPEKWKHNSLSGLMSHFTKSNGKYVMPGSPAIELVTNSDKLNDT
VPSKKYHTAGWDAYFAGYLFIRMTHIFATKQYGQGLNFKEFTHTELMNSIKSFANCVNIV
RGNTSYLRFDGPEPKSTRPKWLYVKMLTSKAVTPSQVAEKMSKFGMVDVKQYTPKRMLVA
VANHGSAQDILLHFKQNNELYVVPYNPIRHSPSVQLILWSSLVISGGIFAWILHQKFQRS
S
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagtcacgaatcagaatttcaacaaggtatatccacacctggagcgtacgttg
aaaaatgctaacttcatagcgattgatggagaattcacaggcatagaaagcggtgatgta
agaaatagcttatttgattccatatacgaacgctatgagaaaaataggagtcacattcaa
ccgtacataataattcaattcggcatttcggcgtttcaacgagttcacgatgagaataaa
tacattgcggaggctttcaatttctttttgctgcctagaactataccgtctaaaaataga
cattttctttggcagatagagtcactagagttcctgactatgtatggatttaactttaat
gaacttgcctacaatggtatttcgtatcttgatcagaccgacaagacactcttagaacaa
cagatacaagagaatacattgttcaacaacgtggaacaatctatttcttacaaggaggaa
gataattttaaaaatacagtcactcaaatatttgaatggctaaagacagctagtgatgaa
gtagattctattaaagttaaatcccctactccaacttttcaatactttatgcataaagaa
ttgagaaaacgtttttcaaatatttggactttctctgggaacaatgtgataactgtgatt
aaagtgctaccagaatcgagacaaattctggaacaggaagaaggctttatattagaaaat
acattacttgaatcatatgtaggtttttcaaaagtattcaattttttaattactttgaaa
aaacctataattgcacataatgcttttttagattttatgtttatacatcaacaattttat
aagccattaccacaaaaatatattgattttaagaataacatacatcaactatttccaaca
atttacgacaccaaattcttaagttatgaactgagaaaaattctccaaacaccagaaaag
tggaaacataattctttaagtggcttaatgagtcattttacaaaaagtaatggaaaatat
gtaatgccaggatcgcctgctattgaactcgtgacaaattcagacaaattaaatgatact
gttccttctaagaaatatcataccgccggatgggatgcttactttgccggttatttattt
attagaatgactcatatatttgctacaaagcaatatggacaaggcttaaattttaaggag
tttacacataccgagttgatgaatagcataaaaagctttgcaaactgtgtaaatatcgta
cgtggcaatacgtcatatttgagatttgatgggcctgaacctaaatccactcgaccaaaa
tggctttatgtgaaaatgttaacatcaaaagcagtaactccttcacaggtagctgaaaaa
atgtcaaagtttggcatggttgacgtgaaacaatatacaccgaaacgcatgttagttgca
gtagcaaatcacggaagcgcacaagatatattactacacttcaagcaaaacaatgagcta
tacgtagttccttataatccgatacggcattcaccctcggttcaacttatcctatggagc
agtttagtcatttctggcgggatcttcgcatggatactgcatcaaaagtttcagagaagc
tcttaa
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