Acromyrmex echinatior (Panamanian leafcutter ant): 105152136
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Entry
105152136 CDS
T03917
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aec
Acromyrmex echinatior (Panamanian leafcutter ant)
Pathway
aec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105152136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aec03019
]
105152136
03041 Spliceosome [BR:
aec03041
]
105152136
Messenger RNA biogenesis [BR:
aec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105152136
Spliceosome [BR:
aec03041
]
Complex B
Other components
Prp19-related factors
105152136
Complex C
105152136
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
RTC
HAT_PRP39_N
HAT_PRP39_C
RTC_insert
TPR_14
Suf
TPR_8
TPR_2
TPR_12
TPR_15
RPN7
PPR
ARM_TT21_C
DHR-2_Lobe_A
TPR_10
NRDE-2
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
105152136
NCBI-ProteinID:
XP_011064533
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MSAKIKNKVLVYEGSNYLRYRLLLSTLSGKPVKITNIRTKNDDPGLKEYEINFIRLLDKM
TNGTKIELNETGTSIYYNPGLLHGGELEHDCSLQRGIGYYLEAIMILAPFCKSCIDLKLR
GVTNNTIDPSVDRIQTAGIPILKKFLTGDNEVILDIRKRGVAPLGGGEIQFKCPINRNLK
TIQLEDSGMVKRIRGTACSIRVSPAIANRIVESAKSVLLKFLPDVYIYADHCKRSISGKS
PGFGVTLTAETTKEVFFSGQAFSPLMTTGSLPCVPEDLGKEAAIKLLDEIYRNGCIDSAF
QSMTAAFMALGKKDVCKVVIGPLTPAMIQFLRDLRDFFGVSFKIEQIKEEEDATLSQQNE
EDLPYEEEILRNPYSVKHWQRYIDHLKSTNSKNLNVVYERALKELPGSYKLWYNYLRQRV
SQLKGRCIIDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEECYITRTRQVFDRSLRA
LPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEYLISIERLDEAAVK
LAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGLRRYTDQLGPLW
NSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLKKLIEEAARNPT
EEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRVKLYEGQPHEIINTYTE
AVQTVQPQLAVGKLYTLWVAFGKFYEENGQIEDARVVFEKATYVPYTKVDDLASVWCEWA
EMEIRHGNCKEALKLMHRATTMPARKVAYHDETETVQMRLYKSLKVWSMYADLEESFGTF
KTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKGIALFKWPNVYDIWNTY
LTKFLKRYGGTKLERTRDLFEQCLEYCPPKYAKALYLLYAKLEEEHGLARHAMSVYERAT
NAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDDNTREICLRFAEMETKLGE
VDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREMLRIKRSVQAMYNTQVNM
MSAQMLNNASNQISDVTLDAMRLLDSKITSNADNAADVKGVIKFVRGVTEKDGKSESHVN
NPDEINIDIDDENDNDVEIEEDVPIEKQTIPSQVFGSLKAIQTEED
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctaaaataaaaaacaaagtacttgtatacgaaggtagtaattatctcagatat
cgcttattattgtccacattatctggaaagccagtaaaaattacaaatattaggacaaaa
aatgatgatcctggtcttaaagaatatgagattaattttatccgtctgttggataagatg
actaatggtacaaaaattgaattaaatgaaactggtaccagtatatattacaatcctggt
ttattacatggaggtgaattagaacatgattgtagcttgcaaaggggtattggttattat
ttggaagcaattatgatacttgctccattttgtaaaagttgtattgatttgaagcttaga
ggagtgaccaataatactatagatccatcagtggacagaattcagactgctggcataccg
atactgaaaaaatttctaacaggtgacaatgaagttatattagatattcgcaagagagga
gtagcccctttgggaggtggagaaatacaatttaaatgtcctattaatcgtaaccttaaa
actattcagttggaagatagtggaatggtgaaacgtattaggggtacagcatgtagcata
agagtttctccagcaattgctaatcgtattgttgaatcagcaaaaagtgttcttcttaag
tttttaccagatgtatatatttatgcagaccattgtaaaaggtcaatcagtggaaagtct
cctggttttggagtcacattgacagcggaaactactaaagaagtattttttagtggacaa
gcattctctccattaatgacaacaggttcgttgccatgtgtacctgaagatcttggtaaa
gaagctgcaatcaaactattagatgaaatttacaggaatggatgtatagattcggctttt
caaagtatgactgctgcatttatggctcttggcaaaaaggatgtttgtaaagttgtaata
ggaccattaactccagcaatgatacaatttctacgcgatttacgggacttttttggagtt
agcttcaagatagaacaaatcaaggaagaagaagatgcaacattatcgcaacagaatgag
gaggatttaccatacgaagaagaaattttacgaaatccatattcagtcaaacattggcaa
cgatatattgatcatcttaaaagtacaaacagtaagaacttaaatgtggtatatgaacga
gcattaaaagaacttccgggcagttacaagctatggtataattatcttcgacaacgtgtg
agtcaactaaaaggtcgatgtataatagatccattgtacgaagatgttaataatgcattt
gaacgagctttagtatttatgcataaaatgccacgtatatggatggattattgtacccta
atgactgaagaatgttatataacacgaacgcgtcaagtgtttgatcggtctttgagagcg
cttcctattacgcagcatcatcgtatatggccattatatattcatttcttaaagaaacat
aatgtatatgagactgctgttagagtctttagaagatacttaaagctagcaccagaagat
acagaagaatatattgaatatttaatatcgattgaaagactcgatgaggctgctgtgaaa
cttgcacagatcgtcaaccaagacgattttgtatcaaagcacggaaagtctaatcatcaa
ctatggaatgaattatgcgatttaatatcaaaaaatccttccaagataaagtctttgaat
gtagatgctattattagaggcggtttaagacgttatacagatcaattgggacctttatgg
aattcattagcagattattatgtacgaagtggcctctttgaaagggcgagggatatttat
gaagaagctatacagacagttactactgtcagagattttacacaagttttcgacgcttat
gcacaatttgaagaacttagtcttaagaaactcatagaagaagcagcaagaaatcctact
gaagaagatgacataaagttagaattgagactggcgcgattggaacatctcatggaaagg
agactattgttacttaattctgtgttgttacgacaaaatccacacaatgtagcagaatgg
cataaaagagtaaaactttatgaagggcaaccacatgagataattaatacatatacagaa
gcagttcagacagtgcaaccacaattagcagttggtaaactatacacattgtgggttgcg
tttggcaaattttatgaggaaaatggacaaatagaagatgctagagtagtatttgaaaaa
gcaacttatgtaccatataccaaagtagatgaccttgcttcagtatggtgcgaatgggcg
gaaatggaaattagacatggaaactgcaaagaagctttaaaactcatgcatcgtgccact
acaatgccagctagaaaagtagcatatcatgatgaaacggaaacggtacagatgagacta
tacaaatctttaaaagtatggtccatgtatgcagatttggaagaaagtttcggtacattt
aagacttgtaaagcagtatatgacaaaataatcgatttgaaaatcgcaactcctcaaatt
atcatcaattatggactgtttttggaagaaaataattactttgaggaagcatttagggca
tatgaaaaaggtattgcactatttaagtggcctaatgtttatgacatttggaatacgtac
ctcacaaaatttttaaaacgttacggtggtacaaaattagaacgtacaagagatctgttt
gaacaatgtttagaatattgtccaccaaagtatgccaaagctttatatttgttgtatgca
aagctagaagaagaacatggtttagcaagacatgccatgtctgtatatgaacgtgcgacg
aatgctgttctcccagaagaaagatttgacatgttcaatatatatattaagaaagctgcc
gatatatatggtgtaccaaaaactcggcaaatatatgaaaaggctatagaagtcttgaat
gatgacaatacaagagaaatatgtttacgatttgcagaaatggaaaccaaattaggagaa
gtagatagagcaagagcaatatatgcacattgtagccaaatatgtgatccaagggtcacg
tccaatttttggcaaatttggaaagaatttgaagtcagacatggaaatgaggatacaatg
cgtgaaatgcttcgaatcaaacgtagcgtgcaagctatgtataatactcaagtaaacatg
atgtccgcacaaatgttgaataatgcatccaatcaaatatcagatgttacgttggatgct
atgcgtttattagatagtaaaattacatcaaatgcagacaatgctgctgatgtcaaagga
gttatcaaatttgtacgtggtgtaacagaaaaagatgggaaatcagaatctcatgtgaat
aatccagatgagattaatattgacatagatgacgaaaatgataatgatgtagaaatagaa
gaagatgtaccgattgagaaacagactataccatcacaagtatttggtagtttaaaagca
atccaaactgaagaggattga
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